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P3DB - Plant Protein Phosphorylation DataBaseP3DB: Plant Protein Phosphorylation DataBase
http://www.p3db.org/
P3DB: Plant Protein Phosphorylation DataBase
http://www.p3db.org/
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University of Missouri - Columbia
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University of Missouri - Columbia
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P3DB - Plant Protein Phosphorylation DataBase | p3db.org Reviews
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P3DB: Plant Protein Phosphorylation DataBase
p3db.org
P3DB - Plant Protein Phosphorylation DataBase
http://www.p3db.org/browse.php
Loading data from server. 2008-2013 University of Missouri.
P3DB - Plant Protein Phosphorylation DataBase
http://www.p3db.org/substrateNetwork.php?type=phosphatase
Phosphatase Substrate Network Search. Phosphatase Substrate Network Graph. Toplogical (Search As Root). 2008-2013 University of Missouri.
P3DB - Plant Protein Phosphorylation DataBase
http://www.p3db.org/help.php
2008-2013 University of Missouri.
P3DB - Plant Protein Phosphorylation DataBase
http://www.p3db.org/acetylation_datasets.php
No of Experimental Studies. No of Acetylation Site. Melo-Braga MN et.al (2012) Molecular and Cellular Proteomics. Finkemeier I et.al (2011) Plant Physiology. Wu X et.al (2011) Plant Physiology. In each cell, the first number is the Acetylprotein count and the second number, in parentheses, is the Acetylation Site count. 2008-2013 University of Missouri.
P3DB - Plant Protein Phosphorylation DataBase
http://www.p3db.org/phosphatase.php
PPP ST phosphatases with large N-termina. Dual Specific Phosphatases (DSPs). MAP Kinase-type Phosphatases (MKPs). Phosphatase and Tensin Homologs (PTEN Pr. PP2C (Protein Phosphatase 2C) Phosphata. Loading data from server. Reference: Data are collected from PlantP ( http:/ plantsp.genomics.purdue.edu/. 2008-2013 University of Missouri.
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ELM - Links
http://elm.eu.org/infos/links.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. The ELM Conservation Scorer assigns a score to each ELM which corresponds to this ELM's conservation throughout homologous sequences. Exploring Interactions of Linear Motifs. The Phospho.ELM database contains a collection of experimentally verified Serine, Threonine and Tyrosine sites in metazoan proteins. The compendium of conditional regulatory interaction interfaces. Other general motif resources. GPI Modification Site Prediction.
digbio
http://digbio.missouri.edu/software.html
Tools we Developed or Co-Developed. Protein tertiary structure prediction. Prediction of both general and kinase-specific protein phosphorylation sites. Primer design for microarray. Plant protein phosphorylation database. Genome Composite Distance Phylogeny for whole-genome phylogeney inferences. Codon usage bias measurement. Protein structure domain partition. Gene expression data analysis. A comprehensive resource for Helicobactor Pylori. Partition and display gene graph based on GO terms.
dbPTM
http://dbptm.mbc.nctu.edu.tw/index.php
DbPTM 10th Year Anniversary. An Integrated Resource for Protein Post-Translational Modifications. Drug binding-associated PTM sites. The Statistics of PTMs. Move to the Statistics Page. Modified residue Glycosylation Lipidation Crosslink. Structural characterization of PTM substrate sites. The Benchmark dataset of PTMs. ex: O-Glycosylation. Reconstruct the PTM Regulatory Network. ex: O-Glycosylation. Welcome to dbPTM 10th Year Anniversary. Integrative Platform for PTM Analysis. Large-scale identification...
Phospho.ELM Links
http://phospho.elm.eu.org/links.html
A database of S/T/Y phosphorylation sites. Phospho.ELM related links. DISPHOS computationally predicts serine, threonine and tyrosine phosphorylation sites in proteins. Resource for prediction functional sites in eukaryotic proteins. Group-based phosphorylation scoring methods. Is an atlas of consensus sequence motifs for kinases and phosphorylation-dependent binding domains. Prediction of Ser, Thr and Tyr phosphorylation sites using neural network. Systematic discovery of in vivo phosphorylation networks.
oilseedproteomics.missouri.edu
Proteomics of Seed-Filling in Oilseeds
http://oilseedproteomics.missouri.edu/index.php
National Plant Lipid Cooperation. Plant Lipid Metabolism Lab. The Arabidopsis Lipid Gene Database. Enhancing Canola through Genomics. Plant Genome Outreach Portal. SoyBase (USDA-ARS Soybean Genetics Database). Plant Protein Phosphorylation Database. The following website was created to disseminate data from NSF-Young Investigator Award Plant Genome Research program-funded research project DBI-0332418 Proteomics of Seed-filling in Oilseeds awarded October 1, 2003. Visitors since November 2004.
The CUCKOO Workgroup
http://www.biocuckoo.org/link.php
Last update: Dec. 19th, 2014. The compendium of computational resources for protein PTMs. Protein post-translational modifications, also called as covalent modifications, play important role in all kinds of biological processes and pathways. To date, there were more than 350 types of PTMs discovered ( DeltaMass. Mann and Jensen, 2003. Walsh and Jefferis, 2006. We roughly classified the computational tools into two groups based on their PTMs types, including Attachment of chemical groups. C Detecting pote...
dbPPT: Database of Phospho-sites in Plants
http://www.dbppt.biocuckoo.org/links.php
Last update: July 2th, 2014. Computational resources of plant protein phosphorylation. Last updated: July 2th, 2014. We apologized that the computational studies without any web links of databases or tools will not be included in this compendium, since it's not easy for experimentalists to use studies directly. We are grateful for user feedback. Please inform Han Cheng. Or Dr Yu Xue. To add, remove or update one or multiple web links below. 1 Plant Phosphorylation Databases. 5 PhosPhAt 4.0. 2 Prediction ...
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P3DB - Plant Protein Phosphorylation DataBase
DB version 3.5 hosts protein phosphorylation data for 9 species from 32 experimental studies, containing 16,477. Phosphoproteins, harboring 47,923 phosphosites. In the NEW P. Spend minutes to create a Secure Website for paper publication. Share your data among your own groups. Search for more Kinase Specific Data. Browse data using Network Tools. Get More Detailed Annotation for proteins and sites. Leave data specific comments and get reply. Have your VIP user account center. Sign up for an account.
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