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DNAnexus - SRA

The platform for genomic analysis in the cloud. Learn more about our tools. This is an alternate search and browse interface for the complete SRA database:. Search for "typical" NGS queries like organism, author, submitter, disease, study type, key words, etc. Identify any study, experiment, sample, or run of interest. Search results displayed in a ranked list with relevant meta data. Download data in SRA format for analysis in your tool of choice. Last updated: Jun 27 2014.

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The platform for genomic analysis in the cloud. Learn more about our tools. This is an alternate search and browse interface for the complete SRA database:. Search for typical NGS queries like organism, author, submitter, disease, study type, key words, etc. Identify any study, experiment, sample, or run of interest. Search results displayed in a ranked list with relevant meta data. Download data in SRA format for analysis in your tool of choice. Last updated: Jun 27 2014.
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DNAnexus - SRA | sra.dnanexus.com Reviews

https://sra.dnanexus.com

The platform for genomic analysis in the cloud. Learn more about our tools. This is an alternate search and browse interface for the complete SRA database:. Search for "typical" NGS queries like organism, author, submitter, disease, study type, key words, etc. Identify any study, experiment, sample, or run of interest. Search results displayed in a ranked list with relevant meta data. Download data in SRA format for analysis in your tool of choice. Last updated: Jun 27 2014.

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DNAnexus - SRA - Newsletter

http://sra.dnanexus.com/newsletter

This newsletter will provide updates and news on SRA to keep you current with the latest product development and tips on how to get the most out of if.

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Terms of service

http://sra.dnanexus.com/license

Http:/ sra.dnanexus.com. The following terms and conditions apply to your use of the DNAnexus hosted SRA. Web site (the “ SRA. Site”) and to which you may gain access by using the SRA. Site: http:/ sra.dnanexus.com. RIGHTS TO USE THE DATA AND TOOLS SERVICE. Site provides access to the Sequence Read Archive data available at http:/ www.ncbi.nlm.nih.gov/sra. Database more than 30 days before the date on which you access the database at the SRA. Site to search and browse SRA. Your use of the SRA. Site are p...

3

Frequently Asked Questions

http://sra.dnanexus.com/faq

This page provides answers to frequently asked questions about the DNAnexus SRA site. What is the SRA powered by DNAnexus? Do I have to pay anything for using the DNAnexus version of SRA? Can I upload and store sequence data onto the DNAnexus SRA site? How can I search the data archive on the DNAnexus SRA site? What functionalities are available to me to browse the returned search results on the DNAnexus SRA site? How exactly do the filters work? In what format can I download the data? What functionaliti...

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Richard Casey | Richard Casey

https://rmcsoftwareinc.wordpress.com/author/rmcsoftwareinc

Software Project Manager – HPC/Bioinformatics. This Blog is Moving! Posted by Richard Casey. Asymp; Leave a comment. For those of you who are subscribed to and following my blogsite, it is moving to a new website effective immediately. The new website is:. For continuity, all of my previous blogs have been migrated to the new site. And I will post all new blogs to the site as well. I hope you join me there! Genome Assembly without the RAM. Posted by Richard Casey. Asymp; 3 Comments. As an alternative to ...

genophoria.wordpress.com genophoria.wordpress.com

How to run kallisto on NCBI SRA RNA-Seq data for differential expression using the mac terminal | genophoria

https://genophoria.wordpress.com/2015/05/13/how-to-run-kallisto-on-ncbi-sra-rna-seq-data-for-differential-expression-using-the-mac-terminal

Genomics euphoria: ramblings of a scientist on genetics, genomics and the meaning of life. How to run kallisto on NCBI SRA RNA-Seq data for differential expression using the mac terminal. On May 13, 2015. Very useful post on Kallisto. This post explains how to run the exceptionally fast RNA-seq k-mer aligner kallisto. From the Pachter lab on data you download from NCBI’s Short Read Archive. Kallisto is really fast and non-memory intensive, without sacrificing accuracy (at least, according to their paper.

rmcsoftwareinc.wordpress.com rmcsoftwareinc.wordpress.com

Genome Assembly without the RAM | Richard Casey

https://rmcsoftwareinc.wordpress.com/2015/02/04/genome-assembly-without-the-ram

Software Project Manager – HPC/Bioinformatics. Genome Assembly without the RAM. Posted by Richard Casey. Asymp; 3 Comments. De novo assembly of Next Generation Sequencing (NGS). Assembling genomes with little memory. Is the construction of genomes without reference to existing known genomes. There is a wide variety of de novo assembly tools. From experience we know that some assemblers require several hundred GB (gigabytes) up to 1 TB (terabyte) of RAM,. Minia source code is available here. And the NCBI ...

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Human Genome Sequence Alignments at GPU Speed |

http://richardcaseyhpc.com/human-genome-sequence-alignments-at-gpu-speed

Human Genome Sequence Alignments at GPU Speed. On April 30, 2015. Next Generation Sequencing (NGS). Technology is now routinely used for sequencing human genomes. The current Illumina HiSeq X. Can sequence human genomes in a few days. And gangs of instruments running in parallel can effectively sequence many human genomes per day. Efforts are underway to run this up to tens of thousands of human genomes per year. The Genome 10K Project. To address this issue, we’re evaluating various parallel seque...

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Ray - Wiki de Calcul Québec

https://wiki.calculquebec.ca/w/Ray

From Wiki de Calcul Québec. E coli K12 MG1655. Ray est un logiciel parallèle qui calcule un assemblage génomique de novo. À partir de données de séquençage de nouvelle génération. Ray est écrit en C et peut fonctionner en parallèle sur plusieurs ordinateurs interconnectés en utilisant la norme MPI. L'assembleur Ray peut s'exécuter sur jusqu'à 100 000 cœurs de processeurs en utilisant le paradigme de passage de messages. Avec le routage par hypercube, c'est 4 096 cœurs maximum. Module load compilers /.

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genophoria | genophoria

https://genophoria.wordpress.com/author/genophoria

Genomics euphoria: ramblings of a scientist on genetics, genomics and the meaning of life. On July 13, 2016. Functional impacts of RNA modifications. On August 30, 2015. My good friend and all-around awesome scientist Claudio has been working on this very cool idea the fruits of which is now available to all. I had the pleasure of being on his team and I’m personally fascinated by the problem. The broad question that Claudio is tackling is “what to RNA modifications do in the cell? On May 13, 2015. And t...

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Sg Rambai Angkut S/B

Sg Rambai Angkut Sdn. Bhd. Pt 5551, Bt.13, Sg.Rambai, 42600 Jenjarom,. Kuala Langat, Selangor Darul Ehsan. Tel: 03-31917040 Fax: 03-31915120.

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Vinhomes Central Park chính thức mở bán căn hộ

NƠI HẠNH PHÚC NGẬP TRÀN. Mặt bằng - Thiết kế. Giá - Thanh toán. Hình ảnh - Video. Tin dự án Vinhomes. Tin Bất động sản. Tin Kinh tế - Tài chính. Dự án đã hoàn thành. Dự án đang triển khai. Dự án sắp triển khai. Mặt bằng - Thiết kế. Giá - Thanh toán. Hình ảnh - Video. Khuyến mãi hấp dẫn. CƠ HỘI ĐẦU TƯ SINH LỢI CAO. VINHOMES CENTRAL PARK - Khu đô thị hiện đại và cao cấp bậc nhất Việt Nam - Đô thị XANH giữa lòng Sài Gòn. Biệt thự Vinhomes Central Park - Biệt thự nghỉ dưỡng 5 sao bên sông Sài Gòn. Vinhomes C...

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Resource Analysis Demo

A Static Resource Analyzer - SRA. SRA analyzes resource usages in a concurrent and object oriented languages with explicit operations for acquiring and releasing resources. We prototype a static analysis technique. That computes upper bounds of virtual machine usages in a concurrent. A type system associating programs with behavioural types that records relevant information for resource usage (creations, releases, and concurrent operations), ( ii. Department of Computer Science and Engineering.

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DBCLS SRA

Interesting and Available SRA Data. Trends in SRA data. 8594; for more detail. Illumina Genome Analyzer II. 454 GS FLX Titanium. Illumina Genome Analyzer IIx. AB SOLiD 4 System. Disease Models, Animal. Cell Transformation, Neoplastic. Genetic Predisposition to Disease. 8594; Adv. Search (by species). Illumina Genome Analyzer II. Illumina Genome Analyzer IIx. 454 GS FLX Titanium. AB 5500 Genetic Analyzer. AB 5500xl Genetic Analyzer. AB SOLiD 3 Plus System. AB SOLiD 4 System. AB SOLiD 4hq System.

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DNAnexus - SRA

The platform for genomic analysis in the cloud. Learn more about our tools. This is an alternate search and browse interface for the complete SRA database:. Search for "typical" NGS queries like organism, author, submitter, disease, study type, key words, etc. Identify any study, experiment, sample, or run of interest. Search results displayed in a ranked list with relevant meta data. Download data in SRA format for analysis in your tool of choice. Last updated: Jun 27 2014.

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Sabine River Authority of Texas Home Page

Toledo Bend FERC Relicensing. Sabine River Compact Commission. Basin Info. and News. Lake Levels and River Conditions. Photos- Kenny Braun Photography. Sabine River Authority of Texas. Orange TX, 77631-0579. 409) 746-2192 FAX: (409) 746-3780. David Montagne, Executive Vice President and General Manager. Place mouse over item for a brief summary. New Slate of Officers for Sabine River Authority - Texas. Applications Being Accepted for Open Position. July 2015 Monthly Water Quality Report.

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Sales Rodríguez Administradores s.l. En nuestro Blog encontraras noticias y contenidos de diversos temas que podremos desarrollar, discutir y comentar. Liberación del Dividendo Digital. Comienza la cuenta atrás para que las comunidades de vecinos adapten sus instalaciones de antenas colectivas de TDT. Leer más: Liberación del Dividendo Digital. Cómo puedo mejorar mi hogar? Por qué mantener y rehabilitar? Que beneficios puedo obtener? Como puedo mejorar la calidad de mi vivienda? 633 97 27 61. Ley de La O...

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Secretaría de Desarrollo Agrario, Territorial y Urbano

Conoce la Secretaría. Anuncia el Presidente Peña Nieto una estrategia para llevar servicios básicos a más de dos millones de habitantes de pueblos indígenas. Destina SEDATU más de 8 mil millones de pesos a obras de infraestructura en zonas marginadas. Entrega SEDATU 53 millones de pesos para reducir la pobreza urbana en Michoacán. Reciben campesinos 291.76 millones de pesos por expropiaciones. El sector vivienda trabaja para abatir el problema de las casas abandonadas: Murillo Karam. Ver más videos.