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SPPIDER - protein interface identification

SPPIDER is a server for identification of residues involved in protein-protein interactions.

http://sppider.cchmc.org/

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SPPIDER - protein interface identification | sppider.cchmc.org Reviews
<META>
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SPPIDER is a server for identification of residues involved in protein-protein interactions.
<META>
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1 protein-protein interaction
2 protein active site recognition
3 protein interface recognition
4 protein interface prediction
5 protein interface identification
6 interaction sites prediction
7 interacting sites prediction
8 binding sites prediction
9 active sites prediction
10
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SPPIDER - protein interface identification | sppider.cchmc.org Reviews

https://sppider.cchmc.org

SPPIDER is a server for identification of residues involved in protein-protein interactions.

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sppider.cchmc.org sppider.cchmc.org
1

SPPIDER - protein interface recognition

http://sppider.cchmc.org/sppider_doc.html

Olvent accessibility based P. Comparison with other predictors. The SPPIDER protein interface recognition server can be used to: (1) predict residues to be at the putative protein interface(s) by considering single protein chain with resolved 3D structure; (2) analyse protein-protein complex with given 3D structural information and identify residues that are being in interchain contact. Training and control sets of proteins used for SPPIDER training and validation:. S435 - Training set. S149 - Control set.

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aplab.cchmc.org aplab.cchmc.org

AP eLab - Methodological Projects

http://aplab.cchmc.org/projects_method.html

E-Laboratory of Aleksey Porollo. These 1D predictions are often the first step to gaining insight into the 3D structure and function of a protein. Accurate prediction of relative solvent accessibilities of amino acid residues in proteins may be used to facilitate protein structure prediction and functional annotation. Toward that goal, we have developed a novel method (SABLE) for improved prediction of relative solvent accessibilities (RSA) ( Ref 1. Trans-membrane domains ( Ref 3. Adamczak R, Porollo A, ...

polyview.cchmc.org polyview.cchmc.org

POLYVIEW-MM - Explorer of molecular motions

http://polyview.cchmc.org/conform.html

Analysis and visualization of the ensembles of molecular models. Structural Data in 3D Coordinates ( Help. Get ID by keyword. Molecular structure in a custom coordinate file. Pdb (Protein Data Bank). 50 MB file size limit). Expected formats: NAMD and CHARMM=dcd/psf GROMACS=trr/gro). Type of conformational analysis. Ensemble of NMR models. Examples: 2kmv, 2kcj). Morph or low-frequency motion. MD or other trajectory. Examples: 1lo1, 2jpa). E-mail address ( optional.

csbg.cnb.csic.es csbg.cnb.csic.es

Florencio Pazos. Xdet - MTreedet

http://csbg.cnb.csic.es/pazos/Xdet

Implements two methods for detecting residues responsible for functional especificity in multiple sequence alignments. These kind of positions, presenting a family-dependent (or function-dependent) conservation pattern, complement the fully-conserved positions as predictors of functionality. They are usually related to functional specificity. The first method is the "mutational behaviour (MB) method", previously implemented in the MTreedet. Is freely available for academic users. Other users, please ...

polyview.cchmc.org polyview.cchmc.org

POLYVIEW - 3D (Submission Form)

http://polyview.cchmc.org/polyview3d.html

Versatile annotation and high quality visualization. Source of Structural Data ( Help. Examples: 3ert, 1ttu, 1naq. Get ID by keyword. Upload custom structure in the PDB format. For files containing additional annotations, such as those generated using, e.g., SPPIDER, ConSurf, or MolMovDB, specify the file/annotation type in the Structure annotation. Overall Structure View ( Help. Or superimpose all models. Or specify it manually:. Eg A:150 or B: or :30). Chain Color and Rendering ( Help. All in same color.

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sppider.cchmc.org sppider.cchmc.org

SPPIDER - protein interface identification

Olvent accessibility based P. General settings ( Help. Prediction of interaction sites using an unbound protein 3D structure. Analysis of known protein-protein complexes and identification of interfaces. Sequence-based prediction of interaction sites ( Experimental. E-mail address ( optional. Structural data in 3D coordinates ( Help. Examples: 3ert, 1ttu, 1naq. Asymmetric unit as defined in a coordinate file. Biological unit as defined by PISA. Chain label ( optional. Get ID by keyword.

sppider.com sppider.com

SPPIDER INC.: SPPIDER WITH NO LIMITS

SPPIDER WITH NO LIMITS. AND IF I DO, WHAT CAN I ACHIEVE? Only you know the answer.

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SPPIDER OFICIAL WEBSITE

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Sentro ha Pagpauswag ha Panginabuhi

Wednesday, September 1, 2010. Our Very Own Office. SPPI takes pride in announcing that it has purchased its own office space. It is a three-story structure which houses on the first floor a display center for community-based products, on the second floor the office spaces and a small staff room, and on the third floor a mini session hall for small group meetings. The office can be found along the National Highway, Barangay Cawayan, Catarman 6400 Northern Samar. Wednesday, May 19, 2010. The Organization e...

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sppidevelopmentblog | A fine WordPress.com site

A fine WordPress.com site. Food-processing in Brgy. Jubang. January 22, 2013. Sentro ha Pagpauswag ha Panginabuhi, Inc. Six members of Jubang United Fisher folks Association (JUFFA) are currently engaged in food-processing. They started with this venture on September 14, 2012 and have been earning additional income from it since. They make mikin, puto, muron, and sukang sinamak (spiced vinegar). Sukang sinamak (spiced vinegar) and mikin (cassava chips). January 11, 2013. Last December 17, 2012, SPPI faci...

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