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Sequencing QC and data analysis blog | Sequencing Quality Control, statistics and bioinformatics blogSequencing Quality Control, statistics and bioinformatics blog
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Sequencing Quality Control, statistics and bioinformatics blog
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Sequencing QC and data analysis blog | Sequencing Quality Control, statistics and bioinformatics blog | seqqc.wordpress.com Reviews
https://seqqc.wordpress.com
Sequencing Quality Control, statistics and bioinformatics blog
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July | 2016 | Sequencing QC and data analysis blog
https://seqqc.wordpress.com/2016/07
Sequencing QC and data analysis blog. Sequencing Quality Control, statistics and bioinformatics blog. Monthly Archives: July 2016. Your Biomarker doesn’t work (and a case for reproducible research)! July 13, 2016. We have all hear about those “breakthrough biomarkers” that. simply. do not work! There have been numerous reports in the literature that investigate why certain biomarkers don’t work after all. […]. Read Article →. Follow us on Twitter! Follow this blog on Feedly! Top Posts and Pages. EpiGenie...
Too few (or none) differential expressed genes? A way to fix the null hypothesis in DESeq2 | Sequencing QC and data analysis blog
https://seqqc.wordpress.com/2016/01/27/too-few-or-none-differential-expressed-genes-a-way-to-fix-the-null-hypothesis-in-deseq2
Sequencing QC and data analysis blog. Sequencing Quality Control, statistics and bioinformatics blog. Too few (or none) differential expressed genes? A way to fix the null hypothesis in DESeq2. January 27, 2016. I’ve been using DESeq2 for testing for differential expression between samples. It’s always worked great, but for some datasets it is not working correctly. I have a DESeqResults object called mydata, and as you can see below, it shows zero differentially expressed genes:. The p value histogram o...
When a color scheme hides batch effects | Sequencing QC and data analysis blog
https://seqqc.wordpress.com/2015/07/24/when-a-colour-scheme-hides-batch-effects
Sequencing QC and data analysis blog. Sequencing Quality Control, statistics and bioinformatics blog. When a color scheme hides batch effects. July 24, 2015. I am using a gene expression dataset collected for 269 patients in 19 different batches, over time. One way to visually inspect batch effects in gene expression measurements is to perform a PCA analysis:. Apparently there are no batch effects, right? It seems like there are no batch effects in the data, right? Now with a different color scheme….
Computational Reproducibility – Workshop in Cambridge, UK | Sequencing QC and data analysis blog
https://seqqc.wordpress.com/2015/09/19/computational-reproducibility-workshop-in-cambridge-uk
Sequencing QC and data analysis blog. Sequencing Quality Control, statistics and bioinformatics blog. Computational Reproducibility – Workshop in Cambridge, UK. September 19, 2015. 8220;I did this yesterday and it worked! 8220;I can’t remember which version of this software I used to make this figure”. 8220;I can’t reproduce the analysis in this paper”. 8220;Why did they do that? Where do the biggest challenges lie? What tools are available? You can register here:. It will be on the 1st of October 2015, ...
inesdesantiago | Sequencing QC and data analysis blog
https://seqqc.wordpress.com/author/inesdesantiago
Sequencing QC and data analysis blog. Sequencing Quality Control, statistics and bioinformatics blog. Confusion matrix terminology is taxicab trigonometry. January 3, 2017. Originally posted on Bits of DNA. What are confusion matrices? In the 1904 book Mathematical Contributions to the Theory of Evolution, Karl Pearson introduced the notion of contingency tables. Sometime around the 1950s the…. Read Article →. How to Use t-SNE Effectively. October 21, 2016. Read Article →. July 13, 2016. April 27, 2016.
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CoreGenomics: MinION for 16S rRNA-seq
http://core-genomics.blogspot.com/2015/07/minion-for-16s-rrna-seq.html
Some comments and analysis from the exciting and fast moving world of Genomics. This blog focuses on next-generation sequencing and microarray technologies, although it is likely to go off on tangents from time-to-time. The CRUK-CI Genomics Core. Tuesday, 7 July 2015. MinION for 16S rRNA-seq. Researchers in the group of Yolanda Sanz. In Spain deposited a preliminary. Given that others are reporting that 2D reads are what we should be aiming for I'd have liked some explanation as to why these were so bad.
CoreGenomics: How should I store my NGS data: disc, tape or tube
http://core-genomics.blogspot.com/2015/07/how-should-i-store-my-ngs-data-disc.html
Some comments and analysis from the exciting and fast moving world of Genomics. This blog focuses on next-generation sequencing and microarray technologies, although it is likely to go off on tangents from time-to-time. The CRUK-CI Genomics Core. Wednesday, 15 July 2015. How should I store my NGS data: disc, tape or tube. Available from CamLab and others). A small number of cards could store almost everything we've ever run! Is anyone doing this? 16 July 2015 at 17:54. Storage of libraries or purified DN...
CoreGenomics: PhD done...time for a holiday
http://core-genomics.blogspot.com/2015/07/phd-donetime-for-holiday.html
Some comments and analysis from the exciting and fast moving world of Genomics. This blog focuses on next-generation sequencing and microarray technologies, although it is likely to go off on tangents from time-to-time. The CRUK-CI Genomics Core. Saturday, 25 July 2015. PhD done.time for a holiday. Core Genomics is now on holiday for two weeks after finally graduating from my PhD yesterday, 20 years to the date I finished my BSc, better late than never! Back in mid-August folks. 26 July 2015 at 09:03.
CoreGenomics: An example of how fast NGS develops
http://core-genomics.blogspot.com/2015/07/an-example-of-how-fast-ngs-develops.html
Some comments and analysis from the exciting and fast moving world of Genomics. This blog focuses on next-generation sequencing and microarray technologies, although it is likely to go off on tangents from time-to-time. The CRUK-CI Genomics Core. Tuesday, 14 July 2015. An example of how fast NGS develops. Illumina have discontinued the version 1 of the NextSeq chemistry. Of last year the NextSeq was a revolutionary new sequencer. That's not much longer than the shelf-life of a kit! Live imaging of synaps...
CoreGenomics: Your genome for under £2000
http://core-genomics.blogspot.com/2015/07/your-genome-for-under-2000.html
Some comments and analysis from the exciting and fast moving world of Genomics. This blog focuses on next-generation sequencing and microarray technologies, although it is likely to go off on tangents from time-to-time. The CRUK-CI Genomics Core. Monday, 13 July 2015. Your genome for under £2000. Illumina have a new offer on their Understand Your Genome. UYG) program that means you can get your genome sequenced, analysed and clinically interpreted for under £2000. And hundreds of genes. With your labs X-...
CoreGenomics: What do you want to be when you grow up?
http://core-genomics.blogspot.com/2015/07/what-do-you-want-to-be-when-you-grow-up.html
Some comments and analysis from the exciting and fast moving world of Genomics. This blog focuses on next-generation sequencing and microarray technologies, although it is likely to go off on tangents from time-to-time. The CRUK-CI Genomics Core. Thursday, 23 July 2015. What do you want to be when you grow up? The MRC have a nice career mapping tool: Interactive career framework. Which allows biomedical researchers to navigate through different options to see how they might get where they want to. Divide...
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Sequencing QC and data analysis blog | Sequencing Quality Control, statistics and bioinformatics blog
Sequencing QC and data analysis blog. Sequencing Quality Control, statistics and bioinformatics blog. Confusion matrix terminology is taxicab trigonometry. January 3, 2017. Originally posted on Bits of DNA. What are confusion matrices? In the 1904 book Mathematical Contributions to the Theory of Evolution, Karl Pearson introduced the notion of contingency tables. Sometime around the 1950s the…. Read Article →. How to Use t-SNE Effectively. October 21, 2016. Read Article →. July 13, 2016. April 27, 2016.
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