seek.princeton.edu

SEEK - An Expression/Co-expression Search and Visualization System, Princeton University

Search-Based Exploration of Expression Compendium. In human (Examples: GLI1 GLI2 PTCH1. What is a query? A query is a gene or a gene-set representing a biological theme that a user wants to investigate. Examples of a good query include genes from a common transcriptionally regulated pathway or process, a cellular component, a molecular complex, or a differentially expressed gene list or biomarker list. Start by entering a query, like GLI1 GLI2 PTCH1. Download and install SEEK.

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SEEK - An Expression/Co-expression Search and Visualization System, Princeton University | seek.princeton.edu Reviews

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Search-Based Exploration of Expression Compendium. In human (Examples: GLI1 GLI2 PTCH1. What is a query? A query is a gene or a gene-set representing a biological theme that a user wants to investigate. Examples of a good query include genes from a common transcriptionally regulated pathway or process, a cellular component, a molecular complex, or a differentially expressed gene list or biomarker list. Start by entering a query, like GLI1 GLI2 PTCH1. Download and install SEEK.

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2 human

3 enter a query

4 hedgehog signaling

5 what is seek

6 seek's compendium

7 genes in human

8 mrna microarray datasets

9 rnaseq datasets

10 platforms

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SEEK - An Expression/Co-expression Search and Visualization System, Princeton University | seek.princeton.edu Reviews

https://seek.princeton.edu

Search-Based Exploration of Expression Compendium. In human (Examples: GLI1 GLI2 PTCH1. What is a query? A query is a gene or a gene-set representing a biological theme that a user wants to investigate. Examples of a good query include genes from a common transcriptionally regulated pathway or process, a cellular component, a molecular complex, or a differentially expressed gene list or biomarker list. Start by entering a query, like GLI1 GLI2 PTCH1. Download and install SEEK.

INTERNAL PAGES

seek.princeton.edu

1

SEEK: Supplemental Material

http://seek.princeton.edu/supplemental.jsp

Raquo; Supplementary Material. SEEK uses a hubbiness correction algorithm to prevent retrieving generally hubby genes. Ie, well connected genes, see Barabasi et al. That might have high coexpression to the query regardless of the query composition. For each gene in the retrieved list (such a gene is known as the target. It subtracts the average coexpression score of the target gene calculated from the coexpression of the target to all genes in the genome. Specifically, we checked the rank difference that...

2

SEEK: Download Datasets

http://seek.princeton.edu/download.jsp

Raquo; Download Datasets. Below are the links to download the processed and normalized gene expression datasets that are used in the SEEK human compendium. These datasets are organized by platform. This data collection has been uniformly processed according to platform, and as such, it can be useful for doing coexpression, differential expression, and other downstream analyses both within and across datasets. 36G, 1960 datasets. HG-U133 Plus 2] Affymetrix Human Genome U133 Plus 2.0 Array. 66M, 96 datasets.

3

SEEK - An Expression/Co-expression Search and Visualization System, Princeton University

http://seek.princeton.edu/index.jsp

Search-Based Exploration of Expression Compendium. In human (Examples: GLI1 GLI2 PTCH1. What is a query? A query is a gene or a gene-set representing a biological theme that a user wants to investigate. Examples of a good query include genes from a common transcriptionally regulated pathway or process, a cellular component, a molecular complex, or a differentially expressed gene list or biomarker list. Start by entering a query, like GLI1 GLI2 PTCH1. Download and install SEEK.

4

SEEK: Citations

http://seek.princeton.edu/citation.jsp

If you find SEEK useful in your research, please cite the following publication:. Targeted exploration and analysis of large cross-platform human transcriptomic compendia. Qian Zhu, Aaron K Wong, Arjun Krishnan, Miriam R Aure, Alicja Tadych, Ran Zhang, David C Corney, Casey S Greene, Lars A Bongo, Vessela N Kristensen, Moses Charikar, Kai Li and Olga G Troyanskaya. 2015), Mar;12(3):211-4, paper link. Works citing or mentioning SEEK:. Miriam R Aure et al. Genome Biology. 2013), paper link. Hutter et al&#4...

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SEEK: Download and install

http://seek.princeton.edu/installation.jsp

Raquo; Download and install. This installation instruction is written for the Linux/Unix environment. Installing SEEK on a local computer will enable you to use the system on a user-specified collection of datasets, or on a batch of queries. Please note the commit version (2329130) when you obtain SEEK from Bitbucket (see below). Prerequisites for installing Sleipnir. Log4cpp (ubuntu packages: liblog4cpp5, liblog4cpp5-dev) ( source. GNU Gengetopt (ubuntu package: gengetopt) ( source. Configure - prefix=/...

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reducio.princeton.edu

Software | Laboratory for Bioinformatics and Functional Genomics

http://reducio.princeton.edu/cm/node/46

Laboratory for Bioinformatics and Functional Genomics. Genome-wide predictions of autism-associated genes]. Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterized by deficits in social communication and restricted, repetitive patterns of behavior. ASD has a strong genetic basis but we still lack the full complement of autism-associated genes. Genome-wide functional interaction networks for 144 human tissues and cell types ]. Search-based exploration of expression compendia]. SEEK i...

greenelab.com

Publications — Integrative Genomics Laboratory

http://www.greenelab.com/publications

Taroni JN, Greene CS. Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. BioRxiv. doi:10.1101/118349. [ GitHub. Way GP, Youngstrom DW, Hankenson KD, Greene CS*, Grant SFA*. Determining causal genes from GWAS signals using topologically associating domains. BioRxiv. doi:10.1101/087718. [ GitHub. Doi:10.1101/078659 [ Bitbucket. 2016 doi:10.1101/055913 [Bitbucket: Tribe Server. 2017;9:27. [ preprint. Way GP, Allaway RA, Bouley SJ, Fadul CE, Sa...

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seek.org

Welcome

Seek The One Higher Life. Our website is currently accessible only by Formal Members. And Students, and is no longer available to the general public. Log-In Area For Temple. Formal Members and Students,. And Staff Employees and Volunteers. Please note that your IP address, and other information about your location and computer, are being recorded for security purposes. Members: If you need to contact the Temple. Staff for any type of assistance, please log-in and.

seek.pe

Seek.pe | Agencia Digital - Diseño web, gráfico, social media, SEO y SEM en Perú

Ingresa y conoce nuestro mundo de diseño. Páginas informativas, corporativas, tiendas online (e - commerce), y mucho más. Posiciónate en los canales digitales más populares del momento. Buscas posicionar tu empresa y generar tráfico hacia tu página web?

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seek.princeton.edu

SEEK - An Expression/Co-expression Search and Visualization System, Princeton University

Search-Based Exploration of Expression Compendium. In human (Examples: GLI1 GLI2 PTCH1. What is a query? A query is a gene or a gene-set representing a biological theme that a user wants to investigate. Examples of a good query include genes from a common transcriptionally regulated pathway or process, a cellular component, a molecular complex, or a differentially expressed gene list or biomarker list. Start by entering a query, like GLI1 GLI2 PTCH1. Download and install SEEK.

seek.pt

Seek - Consumiveis de Informática e Escritório, Lda

Tinteiros Cab. impressão. Toners compativeis (Katun / Media Sciences). Toners compativeis cor (Katun / Media Sciences). Toners compativeis preto (Keymax). Toners compativeis (Katun / Media Sciences). Tintas sólidas compativeis (Katun). Toners compativeis (Katun / Media Sciences). Para CD / DVD. Para laser e jacto tinta. Pastas arquivo com caixa. Pastas arquivo sem caixa. PVC com capa cristal. Com abertura L visor. Pastas com velcro mola. Index / Marcadores páginas. 3M / Post It / Scotch.

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seek|rs :: find interesting and inspiring things

seek.salford.ac.uk

SEEK | Home

SEEK: Salford Environment for Expertise and Knowledge. You are not logged in. Please login to edit your profile. Showcasing our research expertise. SEEK is the University of Salford's online repository of research output. How do I use SEEK? Simply enter a surname or keyword in the search box and click search. Please click the learn more link to find out how to use the new SEEK functionality. Page maintained by Michael Richards.

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