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Structural Biology Laboratory - University of Siena

The Structural Biology Group, led by Prof. Neri Niccolai, actively carries out research in the fields of protein surface accessibility, protein-peptide interactions and atom depth analysis through Nuclear Magnetic Resonance and Bionformatics techniques

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Structural Biology Laboratory - University of Siena | sbl.unisi.it Reviews
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The Structural Biology Group, led by Prof. Neri Niccolai, actively carries out research in the fields of protein surface accessibility, protein-peptide interactions and atom depth analysis through Nuclear Magnetic Resonance and Bionformatics techniques
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1 Structural Biology Laboratory
2 NMR
3 Proteins
4 Modelling
5 accessibility
6 surface
7 protein-peptide interactions
8 atom depth analysis
9 bioinformatics
10 universiti of siena
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Structural Biology Laboratory - University of Siena | sbl.unisi.it Reviews

https://sbl.unisi.it

The Structural Biology Group, led by Prof. Neri Niccolai, actively carries out research in the fields of protein surface accessibility, protein-peptide interactions and atom depth analysis through Nuclear Magnetic Resonance and Bionformatics techniques

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Sadic

http://www.sbl.unisi.it/prococoa

Structural Biology Laboratory - University of Siena. Welcome to SADIC and ProCoCoA. Simple Atom Depth Index Calculator (SADIC) and the Protein Core Composition Analyzer (ProCoCoA) can be run from this server. For a given protein structure SADIC calculates depths of each atom as depth index. Atom depth indexes are stored in the B-factor field of modified PDB files. Thus, selected proteins can be analyzed and visualized by using the modified PDB files which can be downloaded from the Results page. Alocci, ...

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SBL APO

http://www.sbl.unisi.it/apo/forgetpwd.php

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acbrc.org acbrc.org

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/supram.html

1 Supramolecular studies of Rigidoporus. And other fungal laccases. Laccases (benzenediol oxygen oxidoreductase, EC 1.10.3.2) are multicopper oxidases containing transition metal ions which are essential for electron transfer from substrate to T1 copper site. The redox potential E. Is one of the most important parameter that characterizes the behaviour of these enzymes. Despite having very similar metal site features, the T1 copper site span a large range of E. Of their T1-Cu sites. Therefore, the E.

acbrc.org acbrc.org

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/bbsp.html

1 BBSP Building Blocks Structure Predictor. Schematic representation of BBSP algorithm. First, fragments stored in the BBSP matrix are checked and assembled recursively in order to build hypothetical structural models. Finally, structural models generated are compared with the database building blocks and refined by secondary structure and physicalchemical profiles in order to calculate scores and to associate the best structural matches. 13 Detection of protein domain superfamilies/superfolds. For the p...

acbrc.org acbrc.org

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/tools.html

The version of HCAM and BBSP 1.0.2 for MySQL Connector 6.0.5. Comparative results and PDB structures generated by BBSP and other protein remote homology detection methods. The whole suite enclosing the Protein Building Block Database (PBBD), together with PBB-Clust and PBB-Graph algorithms.

acbrc.org acbrc.org

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/hcam.html

1 HCAM - Hidropathy Clustering Assisted Method. Igor N.Berezovsky, Valery M.Kirzhner, Alla Kirzhner, Vladimir R.Rosenfeld and Edward N.Trifonov. Closed loops: persistence of the protein chain returns. Protein Engineering vol.15 no.12 pp.955 957, 2002. Example of multiple alignment analysis by Gonnet substitution matrix of β barrels collected in our database. Each group of residues columns corresponds with good approximation to a separate type of secondary structure. 12 Hydropathy profile analysis. Left s...

acbrc.org acbrc.org

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/pbbd.html

1 PBBD Protein Building Blocks Database. Motifs of super-secondary structure that are consistent with closed loop properties were collected manually using the following principles: 1) amino acid sequence length between 10 and 40 mers; 2) Cα-Cα distance between sequence extremities.

acbrc.org acbrc.org

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/aboutus.html

Name: Gullotto, Dr. Danilo. Clinical Microbiology Lab (infectious diseases). At present Danilo is involved in Structural Genomics/Proteomics research field. He was the author of mathematical methods which are narrowed towards secondary and tertiary structure prediction and remote homologues detection of both globular and transmembrane proteins from scratch. Moreover, he has been studying new evolutionary pathways to unscramble proteomic and genomic code since September 2007. Finally, he is in...

acbrc.org acbrc.org

Advanced Computational Biostructural Research Collaboratory

http://www.acbrc.org/projects.html

Hidropathy Clustering Assisted Method. A new method for protein secondary structure prediction by Kyte-Dolittle hydrophobic clustering and physicochemical profiles analysis. read more. Building Blocks Structure Predictor. For individual purposes, but at the same time we’ll be glade to receive the output results of your computation, mailing to biores@acbrc.org. PBBD - Protein Building Blocks Database. Indicating the structures you found. read more. SHD - Structural Homologues Database.

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Structural Biology Laboratory - University of Siena

Societï Sportiva Nuoto Grosseto. Il poggio del Ninfale ï B&B. Genotracker ï DNA Taceability. E-biolab ï Laboratorio Biotecnologico Virtuale. Toscana Formazione - Formazione Continua. Caffï -scienza Junior Siena. Protein and peptide design. 3D: Dynamic Drug Design. HCV: Genomic search for new. The Structural Biology Group, led by Prof. Neri Niccolai. Actively carries out research in the fields of protein surface accessibility. And atom depth analysis. Through Nuclear Magnetic Resonance.

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Sealy Center for Structural Biology and Molecular Biophysics

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