resprox.ca
RESPROXWishart Pharmaceutical Research Group - RESPROX Program
http://www.resprox.ca/
Wishart Pharmaceutical Research Group - RESPROX Program
http://www.resprox.ca/
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RESPROX | resprox.ca Reviews
https://resprox.ca
Wishart Pharmaceutical Research Group - RESPROX Program
resprox.ca
RESPROX
http://www.resprox.ca/how_to_use.html
How to use this server:. Upload your PDB file or input a PDB ID. The file may contain multiple structures (such as an NMR ensemble or a mulitmeric complex). If you wish to select a particular chain, please include a chain identifier in the PDB ID or edit the PDB file so that it only contains a single chain. Note that ResProx does not calculate or estimate the resolution of DNA or RNA molecules. Once you have entered the PDB file, press the "Submit" button. The following file loading page sg page.
ResProx documentation
http://www.resprox.ca/documentation.html
An outline of the ResProx algorithm. ResProx starts by assessing multiple parameters of protein quality using sub-programs such as VADAR. Willard et al. 2003). Chen et al. 2010). Berjanskii et al. 2010). Correlation between ResProx equivalent resolution and X-ray experimental resolution for the ResProx training and testing sets. Correlation between equivalent resolution and X-ray experimental resolution as calculated by Procheck-NMR, MolProbity, and RosettaHoles2. Correlation between completeness of expe...
RESPROX
http://www.resprox.ca/download.html
VMware Image of ResProx (note this is a 6.1 GB file and it will take 1-2 hours to download, please see the Readme link before downloading). We can only provide very limited support of the downloadable version. Files for Download (Right click on the file and click on 'Save link as'):. List of PDB identifiers of proteins used for ResProx training and testing:. List of the 500 randomly selected NMR PDB identifiers with their calculated ResProx values:. Please contact Canadian Bioinformatics Help Desk.
RESPROX
http://www.resprox.ca/index.html
Please cite the following: Mark Berjanskii, Jianjun Zhou, Yongjie Liang, Guohui Lin and David S. Wishart "Resolution-by-Proxy: A Simple Measure for Assessing and Comparing the Overall Quality of NMR Protein Structures", J Biomol NMR. 2012 Jul;53(3):167-80. Select desired PDB file. Note: the uploaded file must be in PDB format. For example, 1UBQ. Please specify the chain ID:. For example, A, B.). If not, all the chains of the PDB file will be used. Please contact Wishart group. This page has been viewed.
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RESPROX
Please cite the following: Mark Berjanskii, Jianjun Zhou, Yongjie Liang, Guohui Lin and David S. Wishart "Resolution-by-Proxy: A Simple Measure for Assessing and Comparing the Overall Quality of NMR Protein Structures", J Biomol NMR. 2012 Jul;53(3):167-80. Select desired PDB file. Note: the uploaded file must be in PDB format. For example, 1UBQ. Please specify the chain ID:. For example, A, B.). If not, all the chains of the PDB file will be used. Please contact Wishart group. This page has been viewed.
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