stothard.afns.ualberta.ca
Stothard Research Group
http://stothard.afns.ualberta.ca/public_html/links.html
Integrative Genomics Viewer (IGV). Microbial Ecology and Metagenomics. Gene Association and QTL Mapping. Red Hat Linux manuals. Victoria, British Columbia. London, United Kingdom. Seoul, South Korea. University of Alberta (Google Maps). University of Alberta (PDF). Edmonton International Airport (Google Maps). Victoria, BC (Google Maps). Valid XHTML 1.0 Strict. Last updated: July 18, 2016.
rest.rgd.mcw.edu
Analysis & Visualization - Rat Genome Database
http://rest.rgd.mcw.edu/wg/tool-menu
Go to Message Center. Index 1} . { watchedObject.symbol } (RGD ID:{ watchedObject.rgdId} ). Index 1} . { watchedTerm.term } ({ watchedTerm.accId} ). Save List to My RGD. Save what matters to you. Sign in with your RGD account. Select categories you would like to watch. Updates to this gene will be send to { username }. 1" ng-click="toggleGeneWatchSelection(geneWatchAttr)" { geneWatchAttr}. Rat Community Forum (RCF). OLGA - Object List Generator and Analyzer. Rat JBrowse genome browser. The Gene Annotator...
rna.genomics.purdue.edu
AGRY600 - Genomics - Fall 2010 - Purdue Genomics Wiki
http://rna.genomics.purdue.edu/Archived_Items/AGRY600_-_Genomics_-_Fall_2010
2009 BIOL 203 TA sc. 2009 Summer Adv. T. 2010 BIOL 204 TA sc. 2010 Topics in Comp. 2012 Genomics - AG. 2012 Topics in Comp. Seq 204 Annotation . Dr Doom Lab Meetin. Nov 5 lab meeting p. Page last modified 11:07, 17 Dec 2010. AGRY600 - Genomics - Fall 2010. Was this page helpful? AGRY600 - Genomics - Fall 2010. Instructors: Cliff Weil, Michael Gribskov. Questions and Answers (AKA FAQ). Instructors: Cliff Weil, Michael Gribskov. If you are new to wikis, I have started a help page. 07 September 2010. I ...
morus.swu.edu.cn
MnTEdb
http://morus.swu.edu.cn/mntedb
MnTEdb, Morus notabilis. Quick tips for using MnTEdb. Download sequence from MnTEdb. Blast sequence with MnTEdb. GO to tools- blast. Search one or more sequences against TE-related hmm database. Go to tools- hmm. Find and extract open reading frames (ORFs) in one or more nucleotide. Go to tools- getorf. Visualize the relationship between genes and TEs. Go to tools- JBrowse. MnTEdb is a new, specific and comprehensive database, which focused on the TEs data in mulberry plants. This work was funded by the ...
pre.plants.ensembl.org
FTP Download
http://pre.plants.ensembl.org/info/website/ftp/index.html
Track Hub Support in Ensembl. If you want to filter or customise your download, please try Biomart. A web-based querying tool. Detailed information about the available data and file formats can be found here. The data can also be downloaded directly from the Ensembl Plants Pre FTP server. Entire databases can be downloaded from our FTP site in a variety of formats. Please be aware that some of these files can run to many gigabytes of data. Looking for MySQL dumps. To install databases locally? Does not p...
monarchbase.umassmed.edu
MonarchBase - Help
http://monarchbase.umassmed.edu/help.html
Browse genome using GBrowse. Query a single gene. Search a group of genes. Query ESTs and migratory profiles. Browse expanded and contracted gene families. Use the appropriate formats when searching data with IDs:. C1 or BF010 xxxxxxx. Go back to the menu. For BLAST, use sequences as input to search for monarch scaffolds, contigs, genes, ESTs, as well as proteins of other insect orders. Select the appropriate search programs and databases. Advanced users can also set the optional parameters. Of MonarchBa...
bioweb.cbm.uam.es
BIOWEB: MOLECULAR MODELLING GROUP
http://bioweb.cbm.uam.es/links.html
Bioweb: molecular modeling group / grupo de modelado molecular. Http:/ www.cbm.csic.es/bioweb. Direct links to protein sequence and structure databases. RNA, DNA and Genomes. Sequence search / alignments. Protein families / classification. 3D structure / Modelling / Threading. Contacts and Quaternary Structure. Direct links to protein sequence and structure databases. Database information of SWISS-PROT / TrEMBL (ID) (i.e. FTSA ECOLI. Database information of SWISS-PROT / TrEMBL (AC) (i.e. P0A9A6. SCOR: St...
svaproject.org
SVA project
http://www.svaproject.org/references.php
A fast test run for impatient users. Memory configuration, reducing memory usage. Using user annotation track [GFF3/BED]. Selecting genes or regions. Exome or targeted capture sequencing. A command line tool. Updating to the latest version. Screenshot on a Dell laptop with 32-bit Win XP. Javadoc for Java developers [GUI]. Javadoc for Java developers [Command line tool]. We now have a new download site: www.OmicsExpress.com. SVA is published in Bioinformatics. Causal variants for metachondromatosis. Ensem...
ncbi.nlm.nih.gov
Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24973942
Skip to main content. Sign in to NCBI. US National Library of Medicine. National Institutes of Health. 2014; 15(1): 536. Published online 2014 Jun 28. Characterization and potential evolutionary impact of transposable elements in the genome of. José CF Silva. Elza F Araújo. And Marisa V Queiroz. Laboratório de Genética Molecular e de Micro-organismo, Universidade Federal de Viçosa, Viçosa, Brazil. Departamento de Fitopatologia, Universidade Federal de Viçosa, Viçosa, Brazil. Mateus F Santana,. A detailed...
may2009.archive.ensembl.org
FTP Download
http://may2009.archive.ensembl.org/info/data/ftp
Alphabetical List of Pages. Introduction to data access. Exporting data via website. How Ensembl uses DAS. DAS (Distributed Annotation System). About the Ensembl Project. The Ensembl FTP Server. If required, entire databases can be downloaded from our FTP site in a variety of formats, from flat files to MySQL dumps. Please be aware that these files can run to many gigabytes of data. To facilitate storage and download all databases are GNU Zip. Gzip, *.gz) compressed. Non-coding RNA gene preditions. Flat ...
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