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Home - RIKEN Arabidopsis Genome Encyclopedia

RIKEN Arabidopsis Genome Encyclopedia. Arabidopsis full-length cDNA information is available and searchable by gene description, gene name, and cDNA clone name. Information regarding Arabidopsis transposon mutant lines and overexpressed lines is available and searchable by gene description, gene name, and line name. An advanced search function with an ontology tree of phenotypes for transposon mutant lines and overexpressed lines has been provided. RIKEN Arabidopsis Transcription Factor (RARTF) database.

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Home - RIKEN Arabidopsis Genome Encyclopedia | rarge-v2.psc.riken.jp Reviews

<META> DESCRIPTION

RIKEN Arabidopsis Genome Encyclopedia. Arabidopsis full-length cDNA information is available and searchable by gene description, gene name, and cDNA clone name. Information regarding Arabidopsis transposon mutant lines and overexpressed lines is available and searchable by gene description, gene name, and line name. An advanced search function with an ontology tree of phenotypes for transposon mutant lines and overexpressed lines has been provided. RIKEN Arabidopsis Transcription Factor (RARTF) database.

<META> KEYWORDS

1 cdnas

2 lines

3 phenotype search

4 genome map

5 phenotypes

6 about rarge

7 publications

8 akiyama et al

9 e4 pubmed

10 sakurai et al

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cdnas,lines,phenotype search,genome map,phenotypes,about rarge,publications,akiyama et al,e4 pubmed,sakurai et al,related projects,alternative splicing,chloroplast function database,transposon insertion lines,disclaimer

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Home - RIKEN Arabidopsis Genome Encyclopedia | rarge-v2.psc.riken.jp Reviews

https://rarge-v2.psc.riken.jp

RIKEN Arabidopsis Genome Encyclopedia. Arabidopsis full-length cDNA information is available and searchable by gene description, gene name, and cDNA clone name. Information regarding Arabidopsis transposon mutant lines and overexpressed lines is available and searchable by gene description, gene name, and line name. An advanced search function with an ontology tree of phenotypes for transposon mutant lines and overexpressed lines has been provided. RIKEN Arabidopsis Transcription Factor (RARTF) database.

LINKS TO THIS WEBSITE

rarge.psc.riken.jp

RARGE - Blast

http://rarge.psc.riken.jp/blast/blast.pl

Choose program to use and database to search:. Riken Full-length cDNA nonredundant clones (14,661 clones, 18,380 sequences). Riken Full-length cDNA full length sequences (13,181 sequences). Sequences of clones on Riken Full-length cDNA Microarray ver. 2.1 (7,176 clones, 8,158 sequences). Ds-transposon flanking sequences (18,622 sequences). Arabidopsis thaliana whole genome sequence (2004.02.11 MIPS). Arabidopsis thaliana all CDS (2004.02.11 MIPS). Enter sequence below in FASTA. Or load it from disk.

rarge.psc.riken.jp

RARGE - Micro Array Expression Data search

http://rarge.psc.riken.jp/microarray/microarray_expgene.pl

MAEDA (Micro Array Expression DAta search). Rehydration after dehydration 2h.

gb2.psc.riken.jp

Arabidopsis chromosome: 14.47 kbp from Chr1:3,190,826..3,205,293

http://gb2.psc.riken.jp/fgb2/gbrowse

Recenter on this region. Dump selection as FASTA. Submit selection to NCBI BLAST. Help with this browser. Show my user ID. Arabidopsis chromosome: 14.47 kbp from Chr1:3,190,826.3,205,293. Download Decorated FASTA File. Show 14.47 kbp. Protein Coding Gene Models. Show Active Tracks Only. Protein Coding Gene Models. Help with uploading custom tracks]. There are no tracks yet. Add custom tracks : [From text]. Highlight feature(s) (feature1 feature2.). RIKEN Center for Sustainable Resource Science.

rarge.psc.riken.jp

RARGE - RIKEN Arabidopsis Genome Encyclopedia [Sitemap]

http://rarge.psc.riken.jp/sitemap.pl

rarge.psc.riken.jp

RARGE - Arabidopsis thaliana genome map

http://rarge.psc.riken.jp/genomemap/genomemap.pl

rarge.psc.riken.jp

RARGE -RAFLcDNA search-

http://rarge.psc.riken.jp/cdna/cdna_keyword.pl

RAFL cDNAs Keyword Search:. RAFL clone name search (e.g., RAFL02-02-B06). Enter only one clone name in capitals. AGI locus name (e.g., At2g33830). Search for RAFL cDNA. Enter only one code. Gene function (e.g., MAP kinase). Search for RAFL cDNA putative functions that are expected from blastx(nr).

rarge.psc.riken.jp

RARGE [Transposon Mutants Keyword Search]

http://rarge.psc.riken.jp/dsmutant/keyword.pl

Transposon Mutant Keyword Search. Eg, disease TMV). Eg, 1000) option. BLASTP Ranking threshold value:. Mutant Line Code Search.

rarge.psc.riken.jp

RARGE - Alternative splicing data

http://rarge.psc.riken.jp/a_splicing/index.pl

Alternative splicing events on Arabidopsis thaliana. Detected on RAFL clones. We searched alternative splicing events by mapping RAFL clones to the Arabidopsis thaliana. Genome. In this result, we got 1,764 TUs having alternatively spliced clones. We searched alternative splicing events divided to five types: exon skip, alternative terminal exon, alternative donor, alternative acceptor and retained intron. In this page, information of alternative splicing can be used. List of exon skip type.

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rarge-v2.psc.riken.jp

Home - RIKEN Arabidopsis Genome Encyclopedia

RIKEN Arabidopsis Genome Encyclopedia. Arabidopsis full-length cDNA information is available and searchable by gene description, gene name, and cDNA clone name. Information regarding Arabidopsis transposon mutant lines and overexpressed lines is available and searchable by gene description, gene name, and line name. An advanced search function with an ontology tree of phenotypes for transposon mutant lines and overexpressed lines has been provided. RIKEN Arabidopsis Transcription Factor (RARTF) database.

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RARGE- RIKEN Arabidopsis Genome Encyclopedia

To enhance the utility of the RIKEN Arabidopsis resource (full-length cDNAs, transposon mutants and microarray experiments), we had constructed the RARGE database. Then a lot of studies which used the RIKEN resource were accomplished and published, so far RARGE achieved the definite objective. In order to facilitate effectively phenomics studies, currently we are expanding the area of data integration from genome to phenome such as Ds tagged mutant and nuclear-encoded chloroplast proteins. Tables for 1,7...

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