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HUPO-PSI Working Groups and Outputs | HUPO Proteomics Standards Initiative

Skip to main content. HUPO Proteomics Standards Initiative. Block the dates for the 2016 meeting! The HUPO Proteomics Standards Inititative defines community standards for data representation in proteomics to facilitate data comparison, exchange and verification. HUPO-PSI Working Groups and Outputs. Mass spectrometry (MIAPE MS). Mass spectrometry Quantification (MIAPE-Quant). Public documents under revision. Annotation of protein modifications (PSI-Mod). The MIAPE reporting guidelines for proteomics.

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Henning HERMJAKOB

Henning HERMJAKOB

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HUPO-PSI Working Groups and Outputs | HUPO Proteomics Standards Initiative | psidev.info Reviews

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Skip to main content. HUPO Proteomics Standards Initiative. Block the dates for the 2016 meeting! The HUPO Proteomics Standards Inititative defines community standards for data representation in proteomics to facilitate data comparison, exchange and verification. HUPO-PSI Working Groups and Outputs. Mass spectrometry (MIAPE MS). Mass spectrometry Quantification (MIAPE-Quant). Public documents under revision. Annotation of protein modifications (PSI-Mod). The MIAPE reporting guidelines for proteomics.

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1 main menu

2 groups

3 mass spectrometry

4 molecular interactions

5 protein modifications

6 protein separation

7 proteomics informatics

8 sample processing

9 controlled vocabularies

10 miape

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main menu,groups,mass spectrometry,molecular interactions,protein modifications,protein separation,proteomics informatics,sample processing,controlled vocabularies,miape,psi editors,steering committee,specifications,traml,gelml,mzidentml,mzml,mzquantml

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HUPO-PSI Working Groups and Outputs | HUPO Proteomics Standards Initiative | psidev.info Reviews

https://psidev.info

Skip to main content. HUPO Proteomics Standards Initiative. Block the dates for the 2016 meeting! The HUPO Proteomics Standards Inititative defines community standards for data representation in proteomics to facilitate data comparison, exchange and verification. HUPO-PSI Working Groups and Outputs. Mass spectrometry (MIAPE MS). Mass spectrometry Quantification (MIAPE-Quant). Public documents under revision. Annotation of protein modifications (PSI-Mod). The MIAPE reporting guidelines for proteomics.

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psidev.info

1

The Minimum Information About a Proteomics Experiment (MIAPE) | HUPO Proteomics Standards Initiative

http://www.psidev.info/miape

Skip to main content. HUPO Proteomics Standards Initiative. The Minimum Information About a Proteomics Experiment (MIAPE). Reporting guidelines for proteomics. There is then a need for public repositories that contain information from whole proteomics experiments; making explicit both where samples came from, and how analyses of them were performed. It is therefore appropriate to attempt to define the minimum set of information about a proteomics experiment that would be required by such a repository.

2

PSI-MI XML Specification | HUPO Proteomics Standards Initiative

http://www.psidev.info/mif

Skip to main content. HUPO Proteomics Standards Initiative. Molecular Interaction XML Format Documentation. Released 2005, Last maintenance update to version 2.5.4. Available for use now, estimated formal release - Spring 2016. Purpose of the PSI-MI XML format. Purpose of this document. Changes from PSI-MI 1.0 to 2.5. Use of external controlled vocabularies. List of planned features. Further information and relevant links. If you wish to become involved or have any questions. Purpose of this document.

3

The Minimum Information About a Bioactive Entity (MIABE) | HUPO Proteomics Standards Initiative

http://www.psidev.info/miabe

Skip to main content. HUPO Proteomics Standards Initiative. The Minimum Information About a Bioactive Entity (MIABE). The work on MIABE was initiated as part of the EMBL-EBI Industry Programme. And carried out by EMBL-EBI. Work group. The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification. For detailed information on all PSI activities, please see PSI Home Page. Database representation of ...

4

HUPO-PSI meeting 2015 | HUPO Proteomics Standards Initiative

http://www.psidev.info/content/hupo-psi-meeting-2015

Skip to main content. HUPO Proteomics Standards Initiative. Institute for Systems Biology. 401 Terry Avenue North, Seattle, WA, 98109,. The address of the venue is:. 401 Terry Avenue North, Seattle, WA, 98109. Note that the North is very important! Without the North , it’s a different location entirely! This meeting was sponsored by the BBSRC BBR grant 'PROCESS' [BB/K01997X/1]. PSIWorkshopSeattle Agenda rev03-24.xls. The Proteomics Standards Initiative. PSI) is a part of the.

5

HUPO PSI-PAR: standard format for protein affinity reagents | HUPO Proteomics Standards Initiative

http://www.psidev.info/psi-par

Skip to main content. HUPO Proteomics Standards Initiative. HUPO PSI-PAR: standard format for protein affinity reagents. Introduction to the PSI-PAR format. Purpose of this web page. Minimum Information About a Protein Affinity Reagent). Example data in PSI-PAR. List of planned features. The PSI-PAR is available in Pubmed. Report: A community standard format for the representation of protein affinity reagents. The PSI-PAR format has been approved by PSI after a document review. In addition, PSI-PAR docum...

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ebi.ac.uk

Henning

http://www.ebi.ac.uk/~hhe

My name is Henning Hermjakob, I've joined the EBI in September 1997. After working in the production and maintenance of TrEMBL, I'm now contributing to the development of data representation standards in the HUPO Proteomics Standards Initiative. And the implementation of these standards, in particular in the IntAct. Databases. On the next level of abstraction, I'm involved in the Reactome. Database of curated human pathways and the BioModels. Resource of systems biology models. Somewhere in the English c...

jhupo.org

リンク / JHUPO｜日本プロテオーム学会（Japan Human Proteome Organisation）

http://www.jhupo.org/link.html

HLPP (Human Liver Proteome Project). HBPP (Human Brain Proteome Project). PSI (Proteomics Standards Initiative). HAI (Human Antibody Initiative). PPP (Plasma Proteome Project). HGPI (Human Disease Glycomics / Proteome Initiative). HUPO CV I(HUPO Cardiovascular Initiative). Proteome Biology of Stem Cells Initiative. DBI (Disease Biomarkers Initiatives). MMHD (Mouse Models of Human Disease). HKUPP (Kidney and Urine Initiative).

cosmos-fp7.eu

WP1 - Management | http://cosmos-fp7.eu

http://www.cosmos-fp7.eu/WP1

Universiteit Leiden - NMC. Max Planck Institute - MPIMP. The University Of Manchester. Leibniz-Institute of Plant Biochemistry. The University Of Birmingham. The University of Oxford. Work packages use cases. WP2 - Standards Development. WP3 - Database Management System. WP4 - Data Deposition. WP5 - Dissemination Pipelines. WP6 - Coordination with BioMedBridges and biomedical ESFRI infrastructures. WP7 - Outreach and Training. Opensource software for reading and writing mzML. NmrML meeting in Florence.

isa-tools.org

Specification | ISA tools

http://isa-tools.org/format/specification

Format Specification: Release Candidate 1, ISA-Tab v1 (Nov 2008). For more information, contact the ISA team. Example ISA-Tab files are available here. Or in public BII instances. If you are not using the ISA software suite to create ISA-Tab files, but want to create it with or export it from your own system, please, do the follow steps:. Read the format specification before producing an ISA-Tab using these examples files. If you need help contact the ISA team. However, the ISAconfigurator. For more info...

nmrml.org

nmrML - Converter

http://nmrml.org/converter

A tutorial about this tool is available here. The Metabolomics Standards Initiative (MSI). COSMOS Work Package 2.

nmrml.org

nmrML - home

http://nmrml.org/about

NmrML is an open mark-up language for NMR data. It is currently under heavy development and is not yet ready for public use. The development of this standard is coordinated by Workpackage 2 of the COSMOS - COordination Of Standards In MetabOlomicS Project. Why do we need a better NMR data standard? The Metabolomics Standards Initiative (MSI). COSMOS Work Package 2.

nmrml.org

nmrML - nmrML

http://nmrml.org/schema

You can view the documentation and download current and past releases here:. We will have more tutorials and example files with explanations availble here soon. For now if you are interested in taking a look at the format, the best place is the examples directory in the nmrML github repository. For a quick look on the scope of nmrML we recommend this powerpoint presentation. We had several overarching goals that guided our decision making process. The data format should:. COSMOS Work Package 2.

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HUPO-PSI Working Groups and Outputs | HUPO Proteomics Standards Initiative

Skip to main content. HUPO Proteomics Standards Initiative. Block the dates for the 2016 meeting! The HUPO Proteomics Standards Inititative defines community standards for data representation in proteomics to facilitate data comparison, exchange and verification. HUPO-PSI Working Groups and Outputs. Mass spectrometry (MIAPE MS). Mass spectrometry Quantification (MIAPE-Quant). Public documents under revision. Annotation of protein modifications (PSI-Mod). The MIAPE reporting guidelines for proteomics.

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