projects.bigcat.unimaas.nl projects.bigcat.unimaas.nl

projects.bigcat.unimaas.nl

BiGCaT – Department of Bioinformatics

Maastricht University, The Netherlands. Our Main Projects on Software Tools and Services. Quality Control, pre-processing, normalization and statistics of Affymetrix microarrays. Database identifier mapping framework for bioinformatics applications. R package that exposes BridgeDb functionality. Metabolite identifier mapping database ( HMDB ChEBI. Pathway and Network Analysis. Pathways for the People. Get Reactome Pathways in WikiPathways GPML format. Edit and analyze biological pathways.

http://projects.bigcat.unimaas.nl/

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BiGCaT – Department of Bioinformatics | projects.bigcat.unimaas.nl Reviews
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Maastricht University, The Netherlands. Our Main Projects on Software Tools and Services. Quality Control, pre-processing, normalization and statistics of Affymetrix microarrays. Database identifier mapping framework for bioinformatics applications. R package that exposes BridgeDb functionality. Metabolite identifier mapping database ( HMDB ChEBI. Pathway and Network Analysis. Pathways for the People. Get Reactome Pathways in WikiPathways GPML format. Edit and analyze biological pathways.
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5 data analysis pipelines
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open menu,website,share,print,data analysis pipelines,arrayanalysis,identifier mapping,bridgedb,bridgedbr,wikipathways,reactome converter,pathvisio,plugins,currently available,under development,pathvisiorpc,rpathvisio,goelite,apps for cytoscape,semscape
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BiGCaT – Department of Bioinformatics | projects.bigcat.unimaas.nl Reviews

https://projects.bigcat.unimaas.nl

Maastricht University, The Netherlands. Our Main Projects on Software Tools and Services. Quality Control, pre-processing, normalization and statistics of Affymetrix microarrays. Database identifier mapping framework for bioinformatics applications. R package that exposes BridgeDb functionality. Metabolite identifier mapping database ( HMDB ChEBI. Pathway and Network Analysis. Pathways for the People. Get Reactome Pathways in WikiPathways GPML format. Edit and analyze biological pathways.

INTERNAL PAGES

projects.bigcat.unimaas.nl projects.bigcat.unimaas.nl
1

CyTargetLinker « a generic Cytoscape app to build regulatory networks

http://projects.bigcat.unimaas.nl/cytargetlinker

Skip to primary content. Skip to secondary content. CyTargetLinker publication in PLoS One:. How to cite CyTargetLinker. CyTargetLinker was accepted for a presentation at the International Conference on Systems Biology 2013 in Copenhagen on 2 September 2013. Check out my slides here. CyTargetLinker 3.0.1 was released on 15 August 2013. This is the first version for Cytoscape 3. CyTargetLinker was accepted for a presentation at the Network Biology SIG of the ISMB 2013 in Berlin on 19 July 2013.

2

Reactome Converter « Adding Reactome pathways to Wikipathways

http://projects.bigcat.unimaas.nl/reactomeconverter

WikiPathways Release of Reactome Version 48 Human Pathways. Wikipathways release of Reactome Version 46 Human pathways. Wikipathways test release of Reactome Version 46 Human pathways on test2. Skip to primary content. Skip to secondary content. The Reactome Converter converts Reactome pathways to the GPML format. Abacavir transport and metabolism (Homo sapiens) Reactome V48. Proudly powered by WordPress.

3

RPathVisio « Use PathVisio functionality in R

http://projects.bigcat.unimaas.nl/rpathvisio

Skip to primary content. Skip to secondary content. RPathVisio is an R package created to facilitate access to the pathway visualization program PathVisio. The XML-RPC user interface for PathVisio. PathVisioRPC. Proudly powered by WordPress.

4

PathVisioRPC « Extend & automate your PathVisio analyses

http://projects.bigcat.unimaas.nl/pathvisiorpc

Skip to primary content. Skip to secondary content. PathVisioRPC is an XML-RPC interface for the pathway analysis tool PathVisio. It allows you to use PathVisio functions to create pathways and visualise and analyse data on pathways in your familiar analytical environment (R, Python, Perl, C , so on …). It is completely free and open source. PathVisioRPC is published now! Link to the paper on BMC Bioinformtics. BMC bioinformatics 16.1 (2015): 267. Visualize data on the fly on Wikipathways pathways.

5

1st Network of BioThings Hackathon « European site @ Maastricht University // 26-27 April 2014

http://projects.bigcat.unimaas.nl/hackaton-biothings

Hackaton of biothings USA site. Find us on Twitter #networkbiothings. 1st Network of BioThings Hackathon. Skip to primary content. Skip to secondary content. How to arrive / Where to stay. Hackaton of biothings USA site. A page with practical information was created. Information like places near by where you can eat will be published here. See useful information. Special prices at NH hotel are available if you wan to book an hotel room and you find the location convenient. See where to stay. During this ...

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BiGCaT – Department of Bioinformatics

Maastricht University, The Netherlands. Our Main Projects on Software Tools and Services. Quality Control, pre-processing, normalization and statistics of Affymetrix microarrays. Database identifier mapping framework for bioinformatics applications. R package that exposes BridgeDb functionality. Metabolite identifier mapping database ( HMDB ChEBI. Pathway and Network Analysis. Pathways for the People. Get Reactome Pathways in WikiPathways GPML format. Edit and analyze biological pathways.

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