The Solanaceae Genomics Resource (SGR) is a USDA/NSF funded project that provides annotation for gene and transcript sequences from solanaceae species. The SGR provides uniform annotation for gene and transcript sequence from many solanaceae species.
http://potato.plantbiology.msu.edu/
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Spud DB | potato.plantbiology.msu.edu Reviews
https://potato.plantbiology.msu.edu
The Solanaceae Genomics Resource (SGR) is a USDA/NSF funded project that provides annotation for gene and transcript sequences from solanaceae species. The SGR provides uniform annotation for gene and transcript sequence from many solanaceae species.
potato.plantbiology.msu.edu
Spud DB
http://potato.plantbiology.msu.edu/index.shtml
March 28, 2014 - A paper. Describing the resources, tools and data available in Spud DB has been published in the journal The Plant Genome. Spud DB is a collection of datasets and data-mining tools to view and analyze the potato genome, including tools to facilitate breeding improved cultivars. By the International Potato Genome Sequencing Consortium (PGSC). The assembled potato genome is that of the doubled monoploid. Group Phureja DM1-3 (DM; AEWC00000000. Group Tuberosum RH89-039-16 (RH; ERP000627.
Spud DB FAQs
http://potato.plantbiology.msu.edu/FAQ.shtml
How Can I Export Search Results to a Spreadsheet? If the data is formatted as an HTML table, you should be able to select the table in your browser and copy and paste it directly into Excel (or any other modern spreadsheet application). This has been tested and found to be working on our site using Firefox - Microsoft Excel on Mac OS X, and Firefox - Gnumeric on Linux. Can You Provide Me With a Current Set of All Known Solanaceae Proteins? Do You Have Questions? Feel free to contact us. Photos courtesy o...
What's New in Spud DB
http://potato.plantbiology.msu.edu/new.shtml
Feb 1, 2016. The Buell lab at Michigan State have created a new pseudomolecule (chrUn) created from assembled DM reads that did not map to v4.03 and released it as v4.04. The pseudomolecules chr00-chr12 remain the same as v4.03. The v4.04 FASTA file can be downloaded from the PGSC Data Release Page. And searched against on the SpudDB BLAST server. More details about chrUn can be found in Hardigan et al. Jun 19, 2015. SNPs for the Solanum tuberosum. September 8, 2014. April 4, 2014. March 28, 2014. Group ...
Spud DB Breeder's Assistant
http://potato.plantbiology.msu.edu/breeder_assistant.shtml
Data-mine the SolCAP 250 Clone Diversity Panel for Phenotype and Genotype Data. To data-mine the SolCAP 250 clone diversity panel ( Hirsch et al. 2013. For phenotype and genotype data from the SolCAP 8303 Infinium Array. Launch SolCAP 250 Tool. Data-mine the SolCAP 250 Clone Diversity Panel for Phenotype Data. To data-mine the SolCAP 250 clone diversity panel ( Hirsch et al. 2013. For phenotype data from the SolCAP 8303 Infinium Array. Launch SolCAP 250 Phenotype Tool. Launch SolCAP 250 Genotype Tool.
Potato (Solanum tuberosum group Phureja DM1-3) Genome Browser v4.03: chr01:1..60000
http://potato.plantbiology.msu.edu/cgi-bin/gbrowse/potato
Recenter on this region. Dump selection as FASTA. Back to Spud DB website]. Spud DB Genome Browser. Potato (Solanum tuberosum group Phureja DM1-3) PGSC v4.03 Pseudomolecules. Showing 60 kbp from chr01, positions 1 to 60,000. Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position. Solcap snp c1 4595. Control...
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buell-lab.plantbiology.msu.edu
Buell Lab at Michigan State University
http://buell-lab.plantbiology.msu.edu/index.shtml
Contact Information Read More. Postdoctoral and Graduate Research Fellowship Positions in Genome-Enabled Plant Biology. A list of bioinformatic resources that we find useful. Read More. Department of Plant Biology. Plant Breeding, Genetics and Biotechnology Program. Who, What, and Where. C Robin Buell joined the Department of Plant Biology. The Comprehensive Phytopathogen Genome Resource. And Spud DB: Potato Genomics Research. See our Research Page. For more information on these projects. The Buell Labor...
Buell Lab at Michigan State University
http://www.switchgrassgenomics.org/index.shtml
Contact Information Read More. Postdoctoral and Graduate Research Fellowship Positions in Genome-Enabled Plant Biology. A list of bioinformatic resources that we find useful. Read More. Department of Plant Biology. Plant Breeding, Genetics and Biotechnology Program. Who, What, and Where. C Robin Buell joined the Department of Plant Biology. The Comprehensive Phytopathogen Genome Resource. And Spud DB: Potato Genomics Research. See our Research Page. For more information on these projects. The Buell Labor...
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Spud DB
March 28, 2014 - A paper. Describing the resources, tools and data available in Spud DB has been published in the journal The Plant Genome. Spud DB is a collection of datasets and data-mining tools to view and analyze the potato genome, including tools to facilitate breeding improved cultivars. By the International Potato Genome Sequencing Consortium (PGSC). The assembled potato genome is that of the doubled monoploid. Group Phureja DM1-3 (DM; AEWC00000000. Group Tuberosum RH89-039-16 (RH; ERP000627.
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