bioinformatics, genomes, biology etc. "I don't mean to sound angry and cynical, but I am, so that's how it comes across"
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Opiniomics – bioinformatics, genomes, biology etc. "I don't mean to sound angry and cynical, but I am, so that's how it comes across" | opiniomics.org Reviews
https://opiniomics.org
bioinformatics, genomes, biology etc. "I don't mean to sound angry and cynical, but I am, so that's how it comes across"
opiniomics.org
Is the long read sequencing war already over? |
http://www.opiniomics.org/is-the-long-read-sequencing-war-already-over
Is the long read sequencing war already over? Bioinformatics, genomes, biology etc. I don't mean to sound angry and cynical, but I am, so that's how it comes across. Is the long read sequencing war already over? Is well known; we have some awesome software. For working with the data. We won a grant to support this work. And we successfully assembled a tricky bacterial genome. This all led to Nick and I writing an editorial for Nature Methods. So, clearly some bias towards ONT from me. Whilst we are right...
Plotting cool graphs in R |
http://www.opiniomics.org/plotting-cool-graphs-in-r
Plotting cool graphs in R – Opiniomics. Bioinformatics, genomes, biology etc. I don't mean to sound angry and cynical, but I am, so that's how it comes across. Plotting cool graphs in R. Readers of this blog will know that I like to take plots that I find which are fabulous and recreate them. Well let’s do that again 🙂. I saw this Tweet by Trevor Branch on Twitter and found it intriguing:. Trevor A. Branch (@TrevorABranch) August 24, 2016. It shows two plots of the same data. The Excel plot:. 3) { axis(...
Why nanopore sequencing errors aren’t actually errors |
http://www.opiniomics.org/why-nanopore-sequencing-errors-arent-actually-errors
Why nanopore sequencing errors aren’t actually errors – Opiniomics. Bioinformatics, genomes, biology etc. I don't mean to sound angry and cynical, but I am, so that's how it comes across. Why nanopore sequencing errors aren’t actually errors. Why I’m not jumping on the ORCID bandwagon. Finally, a definition for bioinformatics. 4th September 2015 at 1:01 pm. Do you think we’re heading into the new frontier of epigenomics? And if so what are the implications? 4th September 2015 at 4:32 pm. Actually, Mark A...
Creating an image of a matrix in R using image() |
http://www.opiniomics.org/creating-an-image-of-a-matrix-in-r-using-image
Creating an image of a matrix in R using image() – Opiniomics. Bioinformatics, genomes, biology etc. I don't mean to sound angry and cynical, but I am, so that's how it comes across. Creating an image of a matrix in R using image(). You have a matrix in R, and you want to visualise it – say, for example, with each cell coloured according to the value in the cell. Not a heatmap, per se, as that requires clustering; just a simple, visual image. Well, the answer is image(). Matrix as a table of. Is the long...
Reading data from google sheets into R |
http://www.opiniomics.org/reading-data-from-google-sheets-into-r
Reading data from google sheets into R – Opiniomics. Bioinformatics, genomes, biology etc. I don't mean to sound angry and cynical, but I am, so that's how it comes across. Reading data from google sheets into R. Reading data from google sheets. Into R is something you imagine should be really simple, but often is anything but. However, package googlesheets. Goes a long way to solving this problem. Let’s crack on with an example. First, install the software:. See: https:/ t.co/dPyiwIqJ3O. People are wron...
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Omics! Omics!: September 2014
http://omicsomics.blogspot.com/2014_09_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, September 09, 2014. Reanalysis Lays Bare MinION Review's Spectacular Flaws. T and submit it to a journal. Links to this post. Friday, September 05, 2014. Oxford Takes Some Flak, Fires Back. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Reanalysis Lays Bare MinION Reviews Spectacular F. Oxford Takes Some Flak, Fires Back. About a...
Omics! Omics!: February 2014
http://omicsomics.blogspot.com/2014_02_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Wednesday, February 26, 2014. NGS Saves A Young Life. Links to this post. Monday, February 24, 2014. A Sunset for Draft Genomes? Links to this post. Thursday, February 13, 2014. How will you deal with GRCh38? So, a significant advance, but a bit unpleasant one if you are in the space. You now have several ugly options before you with regard to your prior data m...
Omics! Omics!: June 2015
http://omicsomics.blogspot.com/2015_06_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, June 30, 2015. June 2015: Busting Out All Over with Genomics Technology. 10X Genomics and a pair from Oxford Nanopore. Links to this post. Monday, June 08, 2015. BGI Unveils a Sequencing Factory to Go. When I was in George Churchs lab, he submitted a grant proposal (which, alas, was not funded) for a sequencing factory to generate one megabase. The Ion Tor...
Omics! Omics!: Leaky clinical metagenomics pipelines are a very serious issue
http://omicsomics.blogspot.com/2015/07/leaky-clinical-metagenomics-pipelines.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Thursday, July 02, 2015. Leaky clinical metagenomics pipelines are a very serious issue. Update: Some significant issues with the tone of this post are discussed in a follow-up. The informatics methods used both in the case study and the paper in question were published as a separate paper in Genome Research. The other issue uncovered by Salzberg's group is also tr...
Omics! Omics!: June 2015: Busting Out All Over with Genomics Technology
http://omicsomics.blogspot.com/2015/06/june-2015-busting-out-all-over-with.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, June 30, 2015. June 2015: Busting Out All Over with Genomics Technology. 10X Genomics and a pair from Oxford Nanopore. Mountain for these technologies to summit are very large polyploid genomes. PacBio has a nice write-up on their blog. In case you don't (as I don't) have access to the paper in Nature Genetics. But nothing of real substance. Another hazy e...
Omics! Omics!: The genomic history of a breast cancer revealed
http://omicsomics.blogspot.com/2009/10/genomic-history-of-breast-cancer.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Wednesday, October 07, 2009. The genomic history of a breast cancer revealed. A supplementary item that could easily be its own paper. One final thought: the next year will probably be filled with a lot of similar papers. Cancer genomics is gearing up in a huge way. With Wash U alone planning 150 genomes. 809-813 : 10.1038/nature08489. Incidentally, my Google alert...
Omics! Omics!: Clinical Metagenomics Pipelines: Revisiting & Reflecting
http://omicsomics.blogspot.com/2015/07/clinical-metagenomics-pipelines.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Friday, July 10, 2015. Clinical Metagenomics Pipelines: Revisiting and Reflecting. Last week's piece concerned an F1000 paper by Steven Salzberg and colleagues which reanalyzed a clinical metagenomics dataset and alleged two serious problems. The first claim was that the software used in the paper failed to detect potential bacterial pathogens in the samples...
Omics! Omics!: March 2015
http://omicsomics.blogspot.com/2015_03_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Tuesday, March 31, 2015. To Properly Assess Cancer Genomics, One Cannot Dismiss It. Through a happy series of professional events, I now get to have lunch very regularly with the author of the excellent blog The Curious Wavefunctio. A very expensive exercise in looking for keys under the lamppost, or something far more valuable? Links to this post. Some upstream st...
biomickwatson | opiniomics – has moved! www.opiniomics.org
https://biomickwatson.wordpress.com/author/biomickwatson
Opiniomics – has moved! Opiniomics – has moved! Just a note to say the blog has moved to a new host and new URL: http:/ www.opiniomics.org/. Please update bookmarks and feeds! This entry was posted in opinion. January 25, 2016. The views expressed here are the author's own and do not represent the views of the University of Edinburgh, or any other past, present or future employer. Ah yes. Sorry should have read the bio. 45 minutes ago. How is it that every Corbynista is an utter nutjob?
Omics! Omics!: July 2015
http://omicsomics.blogspot.com/2015_07_01_archive.html
A computational biologists personal views on new technologies and publications on genomics and proteomics and their impact on drug discovery. Friday, July 10, 2015. Clinical Metagenomics Pipelines: Revisiting and Reflecting. Links to this post. Thursday, July 02, 2015. Leaky clinical metagenomics pipelines are a very serious issue. Update: Some significant issues with the tone of this post are discussed in a follow-up. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Oxford Nanop...
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Opiniomics – bioinformatics, genomes, biology etc. "I don't mean to sound angry and cynical, but I am, so that's how it comes across"
Bioinformatics, genomes, biology etc. I don't mean to sound angry and cynical, but I am, so that's how it comes across. HiSeq move over, here comes Nova! A first look at Illumina NovaSeq. Illumina have announced NovaSeq. Illumina have done this before. It’s what they do. So no-one should be surprised. I’ve taken the stats from the spec sheet linked above and produced the following. If there are any mistakes let me know. Reads per flowcell (billion). Reads per lane (million). Throughput per lane (Gb).
Blog de opinion--gurlz - Blog de opinion--gurlz - Skyrock.com
Mot de passe :. J'ai oublié mon mot de passe. Blog de opinion- gurlz. ON DIS CE QUON PENSE DONC SI SA VOUS FACHE YA UN X ROUGE CLIKE DESSU! SINAN LAISSER VOS COMMS. Mise à jour :. Abonne-toi à mon blog! Trouvez -vous sa biien de. Le copain dune autre? Ques-ce que vous en pensez? Ou poster avec :. Retape dans le champ ci-dessous la suite de chiffres et de lettres qui apparaissent dans le cadre ci-contre. Posté le lundi 29 juin 2009 21:31. Modifié le vendredi 03 juillet 2009 00:51. Ou poster avec :.
Blog de opinion-6-9 - opinion-6-9 - Skyrock.com
Mot de passe :. J'ai oublié mon mot de passe. Black Metal ist Krieg. Mise à jour :. Allez- y , Metal rules ;D. Abonne-toi à mon blog! Le commencement : Feather Complaint. N'oublie pas que les propos injurieux, racistes, etc. sont interdits par les conditions générales d'utilisation de Skyrock et que tu peux être identifié par ton adresse internet (67.219.144.114) si quelqu'un porte plainte. Ou poster avec :. Posté le jeudi 08 mai 2008 12:15. Modifié le jeudi 29 janvier 2009 05:19. Ou poster avec :. N'oub...
Opinion-8-ed
Thursday, April 10, 2014. Living Life or Just Going Through the Motions. After some more drama which is part of my daily life anymore, I started thinking about some fundamental questions. The questions ranged greatly about kids, work, purpose, and the point of it all. All these questions arose to one big one that I was surprised to answer myself. Maybe you believe in reincarnation and you will just come back as something or someone else. Maybe you are a traditional believer, this would get you into h...
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daniel lopez
Jueves, 7 de marzo de 2013. LOS CUATRO PILARES DE LA CONVERGENCIA TEGNOLOGICA. Es el conjunto de disciplinas de la convergencia interdisciplinaria de investigaciones científicas y tegnologias que se centran el entorno a los fenómenos funcionales de cada persona que le denominan mente y el comportamiento del ser en si. Lunes, 22 de agosto de 2011. Bailes de la region pacifica. Se compone de flauta traversa de seis orificios (metálica o de caña) y el clarinete moderno. A veces es posible encontrar como...
La Opinión A Coruña
ACCEDER AHORA CON UNA CUENTA. Contenidos en vLex España. La Opinión A Coruña. Laboral y Seguridad Social. Ferrol acogerá el Salón del Caballo Equiocio del 17 al 20 de este mes. El certamen combinará la competición hípica con actividades para toda la familia. Emesa admite que la plantilla actual no basta para afrontar su carga de trabajo. La directora de la empresa reconoce en el juicio por el ERE que el personal es insuficiente. Juan Alonso Tembrás toma posesión como alcalde de As Somozas. Isolux Corsán ...
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