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open-bio.org

Open Bioinformatics Foundation

From Open Bioinformatics Foundation. Through our fiscal sponsor, Software in the Public Interest, Inc. You can donate to the OBF, including online by credit card. Donations made through SPI are 501(c)3 tax-exempt in the US. (SPI also has a charitable partner organization in Europe.) Your contribution helps fund a growing community of people committed to developing reusable open-source software for advancing biological research. BioJava 5.0.0 is out. Biopython 1.71 released. See also our news page. The Op...

http://www.open-bio.org/

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From Open Bioinformatics Foundation. Through our fiscal sponsor, Software in the Public Interest, Inc. You can donate to the OBF, including online by credit card. Donations made through SPI are 501(c)3 tax-exempt in the US. (SPI also has a charitable partner organization in Europe.) Your contribution helps fund a growing community of people committed to developing reusable open-source software for advancing biological research. BioJava 5.0.0 is out. Biopython 1.71 released. See also our news page. The Op...
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Open Bioinformatics Foundation | open-bio.org Reviews

https://open-bio.org

From Open Bioinformatics Foundation. Through our fiscal sponsor, Software in the Public Interest, Inc. You can donate to the OBF, including online by credit card. Donations made through SPI are 501(c)3 tax-exempt in the US. (SPI also has a charitable partner organization in Europe.) Your contribution helps fund a growing community of people committed to developing reusable open-source software for advancing biological research. BioJava 5.0.0 is out. Biopython 1.71 released. See also our news page. The Op...

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lists.open-bio.org lists.open-bio.org

lists.open-bio.org Mailing Lists

Listsopen-bio.org Mailing Lists. Below is a listing of all the public mailing lists on lists.open-bio.org. Click on a list name to get more information about the list, or to subscribe, unsubscribe, and change the preferences on your subscription. To visit the general information page for an unadvertised list, open a URL similar to this one, but with a '/' and the list name appended. List administrators, you can visit the list admin overview page. To find the management interface for your list.

emboss.open-bio.org emboss.open-bio.org

EMBOSS Homepage

The European Molecular Biology Open Software Suite. Funded from May 2009 by BBSRC grant BBR/G02264X/1. 8226;  Features . 8226;  License . 8226;  Citing . 8226;  Developers . 8226;  News . 8226;  Contact . Software for molecular biology - high quality, open-source and free . more. 160;How to . 8226;  Stable release . 8226;  CVS release . 8226;  mEMBOSS . 8226;  Change log . 8226;  Fixing . 8226;  Bug fix files . Download a stable version, get the latest code and fixes . more. 160;Mailing lists . 8226; &#1...

blipkit.open-bio.org blipkit.open-bio.org

Blipkit: Biomedical LogIc Programming Knowledge Integration Kit

Blip: Biomedical Logic Programming. Blip is a collection of logic programming modules intended primarily for bioinformatics and biomedical applications, although it contains some modules which may be of more general interest. Blip is intended to be both an application library, and a deductive database/query system. Blip is written in SWI-Prolog. A fast, robust and scalable implementation of ISO Prolog. Blip is Free Software. Available, licensed under the LGPL. Blip, aka blipkit. Can be cited as. SWI-Prol...

bioruby.open-bio.org bioruby.open-bio.org

BioRuby

BioRuby 1.4.3.0001. BioRuby 1.4.3. BioRuby 1.4.2. BioRuby 1.4.1. BioRuby 1.4.0. BioRuby 1.3.1. BioRuby 1.3.0. Open source bioinformatics library for Ruby. At the 15th Annual Bioinformatics Open Source Conference (BOSC 2014). Held in Boston on July 11-12, we will be presenting a talk entitled "BioRuby and distributed development" ( Abstract. OBF Google Summer of Code 2014. An ultra-fast scalable RESTful API to query large numbers of VCF datapoints". By Loris Cro ( Blog. Our project was supported by Inform...

biomoby.open-bio.org biomoby.open-bio.org

BioMoby – A world of data at your fingertips

A world of data at your fingertips. Funding Agencies and Supporters. Who is using BioMOBY and for what? Who is using BioMOBY and for what? End user BioMOBY Applications. Register A MOBY Service. Connecting to MOBY Central in Perl and Java. Extensions and Accessories beyond the BioMOBY core API. How to retrieve metadata about MOBY resources. The use of LSID’s in BioMOBY. Unit Tests for Moby Services. Create Unit Tests With Dashboard. Dashboard & Unit Testing. Unit Testing Services with Java. June 12, 2008.

biolib.open-bio.org biolib.open-bio.org

BioLib

BioLib: libraries for the Bio* languages. BioLib: libraries for the Bio* languages. Brings together a set of opensource C/C libraries and makes them available to all Bio* languages: BioPerl, BioRuby, BioPython, BioJAVA and Bioconductor. Currently supported languages: Perl, Python and Ruby (R and JAVA are planned). Reads Affymetrix microarray .CEL and .CDF formats. BioLib Staden io lib. Reads/writes sequencer trace files, including SFF, ABI, SCF, ALF and PLN formats. Support with OO model for Ruby. BioLib...

testing.open-bio.org testing.open-bio.org

Open Bioinformatics Foundation - Testing server

redmine.open-bio.org redmine.open-bio.org

OBF Redmine

This is where we track bugs and issues related to Open-Bio projects. BioRuby (old issues only). The BioRuby Project is now using GitHub for their issue tracker.

INTERNAL PAGES

open-bio.org open-bio.org
1

BOSC 2012 Schedule - Open Bioinformatics Foundation

http://www.open-bio.org/wiki/BOSC_2012_Schedule

From Open Bioinformatics Foundation. Click here to download this schedule as PDF. Complete program as PDF. Day 1: Friday, July 13. Registration (Early arrival is recommended as there are usually long lines). Nomi Harris (Chair, BOSC 2012). Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way * Talk. Jonathan Eisen (University of California, Davis). Session: Cloud and Parallel Computing. Cloud] Cloudgene - an execution platform for MapReduce programs in public and private clouds. Genome...

2

SourceCode - Open Bioinformatics Foundation

http://www.open-bio.org/wiki/SourceCode

From Open Bioinformatics Foundation. Anonymous access to the latest hosted source code repositories. Note to casual users. How to browse our latest source code repositories via the web. Downloading and updating code via Anonymous CVS. Downloading and updating code via Anonymous Rsync. Downloading and updating code via Anonymous SVN. Anonymous access to the latest hosted source code repositories. Uses http:/ github.com/bioruby/bioruby. Uses http:/ github.com/biopython/biopython. Note to casual users.

3

Bioinformatics Open Source Conference (BOSC)

http://www.open-bio.org/bosc2004/accepted_abstracts.html

Abstracts Accepted For Formal Presentations. Title: BioMart - a federated query architecture. BioMart is an OpenSource project and all software is licensed under LGPL. Title: BioMake: Functional Logical Task Management for Bioinformatics. Approaches range from the lightweight and generic to heavy duty frameworks honed specifically for bioinformatics compute pipelines. An example of the former is UNIX Makefiles, which is a configuration of tasks where some files must be updated automatically from othe...

4

BOSC 2007 - Open Bioinformatics Foundation

http://www.open-bio.org/wiki/BOSC_2007

From Open Bioinformatics Foundation. The 8th annual Bioinformatics Open Source Conference ( BOSC. 2007) will take place in Vienna, Austria. As one of several Special Interest Group (SIG) meetings occurring in conjunction with the 15th International Conference on Intelligent Systems for Molecular Biology. Dr Carole Goble's slides are now available on slideshare. Links to Slides for many talks are now available from the Schedule. Call for Speakers and Abstracts. Call For Wifi Workshops. July 19,20 BOSC 2007.

5

BOSC 2014 - Open Bioinformatics Foundation

http://www.open-bio.org/wiki/BOSC_2014

From Open Bioinformatics Foundation. The 15th Annual Bioinformatics Open Source Conference (BOSC 2014) was held at the Hynes Convention Center in Boston on July 11-12, right before ISMB 2014. As one of the official ISMB SIG satellite meetings. Feedback welcome via email bosc@open-bio.org or @OBF BOSC on Twitter. With links to slides and videos of the talks). Storify Tweet archives for Day One. Brad Chapman's blog posts. BioInform article about Philip Bourne's keynote talk. James Malone's blog post. If yo...

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lappland.io lappland.io

Scientific peer-review as web-annotations: an experiment - Lappland. Inside Out.

http://lappland.io/blog/2014/03/open-peer-review-as-annotations

Lappland. Inside Out. Scientific peer-review as web-annotations: an experiment. Mon 24 March 2014. Recently I was invited by the journal F1000 Research. To review an article about Software Carpentry. Platform. What follows is an account of what motivated me to experiment with this, and what resulted from it. One step in fixing peer-review: open reviews. Are strictly open and associated with the reviewer's identity. Why the peer-review process is still loathsome. Perhaps most importantly, a reader of the.

bacteriomics.com bacteriomics.com

Bioinformatics - Bacteriomics.com

http://bacteriomics.com/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

bioageing.net bioageing.net

Bioinformatics - Bioageing.net

http://bioageing.net/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

bioautomata.net bioautomata.net

Bioinformatics - Bioautomata.net

http://bioautomata.net/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

asianreferencegenome.org asianreferencegenome.org

Bioinformatics - Asianreferencegenome.org

http://asianreferencegenome.org/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

bioastrology.com bioastrology.com

Bioinformatics - Bioastrology.com

http://bioastrology.com/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

asiagenomics.com asiagenomics.com

Bioinformatics - Asiagenomics.com

http://www.asiagenomics.com/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

bioinformatics.org bioinformatics.org

Main Page - Bioinformatics.Org Wiki

http://bioinformatics.org/wiki

From Bioinformatics.Org Wiki. Welcome to the Bioinformatics.org. It currently contains more than 954. Edited by hundreds of users. More about this wiki. Selected pages about the field of bioinformatics. Including, " What is bioinformatics. Becoming a bioinformatics practitioner. External links (related wikis). Has volumes of information on everything related to biology, including a great article on bioinformatics. The Open Bioinformatics Foundation (O B F). This page has been accessed 252,930 times.

bioboard.net bioboard.net

Bioinformatics - Bioboard.net

http://bioboard.net/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

leopardgenome.org leopardgenome.org

Bioinformatics - Leopardgenome.org

http://leopardgenome.org/index.php/Bioinformatics

Involves the use of techniques including applied mathematics, informatics, statistics, computer science, chemistry, and biochemistry to solve biological problems. Major research efforts in the field include sequence alignment, gene finding, genome assembly, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions, and the modeling of evolution. Are often used interchangeably. However. Analysis of gene expression. Evolutionary biology is the...

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open-bio.jp open-bio.jp

オープンバイオ - オープンバイオ研究会

英名 Japan Open Bioinformatics Research Group. 通称 Open Bio Japan. 略称 (O B J). などバイオインフォマティクス用のソフトウェア開発プロジェクトを円滑に推進するために Open Bio Foundation ( OBF. また、日本バイオインフォマティクス学会 (JSBi) のニュースレター第12号に バイオインフォマティクスコミュニティの新潮流 として、オープンバイオ研究会の活動を含む特集記事が掲載されていますので、ぜひご覧ください。 URL:http:/ www.jsbi.org/pdfs/NewsLetter/newsletter 12.pdf. 2015年3月20日(金) 21日(土)にかけて、北陸先端科学技術大学院大学 (JAIST) にて 第19回オープンバイオ研究会 を開催します。 2014年3月20日(木) 21日(金)にかけて、北陸先端科学技術大学院大学 (JAIST) にて 第18回オープンバイオ研究会 を開催します。 2010年4月26日(月) 18:00- NBA Jounal Club. 特に BioMart,...

open-bio.org open-bio.org

Open Bioinformatics Foundation

From Open Bioinformatics Foundation. Through our fiscal sponsor, Software in the Public Interest, Inc. You can donate to the OBF, including online by credit card. Donations made through SPI are 501(c)3 tax-exempt in the US. (SPI also has a charitable partner organization in Europe.) Your contribution helps fund a growing community of people committed to developing reusable open-source software for advancing biological research. BioJava 5.0.0 is out. Biopython 1.71 released. See also our news page. The Op...

open-biokatalyse.de open-biokatalyse.de

Home | Open-Biokatalyse

Skip to main content. Breakthrough in cost-competitive bio-based furan production. Archer Daniels Midland Company (ADM). Has developed a new process for commercial production of HMF. ADM is seeking companies with a strong interest in developing applications for sustainable, competitively priced furans that can be used as precursors for manufacturing a wide variety of commodity or . New biosensors in the field of wine, food and environment. German company specialized in development of innovative molecular...

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Open Biomed | Advice for members of the Biomed industry

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