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Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data | Molecular chaperone binding site prediction

Molecular chaperone binding site prediction. Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data. Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau and Joost Schymkowitz. VIB Switch Laboratory, Vrije Universiteit Brussel, Brussels, Belgium. Click on the Analyze. Button in the top menu to use the prediction server.

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Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data | Molecular chaperone binding site prediction | limbo.switchlab.org Reviews

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Molecular chaperone binding site prediction. Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data. Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau and Joost Schymkowitz. VIB Switch Laboratory, Vrije Universiteit Brussel, Brussels, Belgium. Click on the Analyze. Button in the top menu to use the prediction server.

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Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data | Molecular chaperone binding site prediction | limbo.switchlab.org Reviews

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Molecular chaperone binding site prediction. Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data. Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau and Joost Schymkowitz. VIB Switch Laboratory, Vrije Universiteit Brussel, Brussels, Belgium. Click on the Analyze. Button in the top menu to use the prediction server.

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User guide | Molecular chaperone binding site prediction

http://limbo.switchlab.org/content/user-guide

Molecular chaperone binding site prediction. The full article of the DnaK binding site predictor is available HERE. The Limbo server takes maximally 100 protein sequences at a time to analyse. For extremely large jobs, please feel free to contact us. The input sequences have to be provided in FASTA Format. This option is selected by default and is recommended for the most accurate chaperone binding site prediction. For DnaK binding, this prediction setting has 91% specificity and 93.2% sensitivity&#4...

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Citation | Molecular chaperone binding site prediction

http://limbo.switchlab.org/content/citation

Molecular chaperone binding site prediction. Please use this reference to cite Limbo:. Van Durme J, Maurer-Stroh S, Gallardo R, Wilkinson H, Rousseau F, Schymkowitz J. Accurate prediction of DnaK-peptide binding via homology modelling and experimental data. PLoS Comput Biol. 2009 Aug;5(8):e1000475.

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Analyse sequences with Limbo | Molecular chaperone binding site prediction

http://limbo.switchlab.org/limbo-analysis

Molecular chaperone binding site prediction. Analyse sequences with Limbo. Paste one or more (max 500) protein sequences in FASTA format. Into the field below: *.

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Limbo news | Molecular chaperone binding site prediction

http://limbo.switchlab.org/content/newsitems

Molecular chaperone binding site prediction. Site registration has been removed. LIMBO analysis is now open to everyone. Rearranged the prediction algorithm options. Please see the user guide. Redesigned the entire Limbo website. Free registration is now required for sequence analysis. Added a FASTA Format. Added feature: each analysis comes with a tab-delimited text file which can be imported in common spreadsheet programs. Fixed a bug in the graphical plot generation.

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Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data | Molecular chaperone binding site prediction

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Molecular chaperone binding site prediction. Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data. Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau and Joost Schymkowitz. VIB Switch Laboratory, Vrije Universiteit Brussel, Brussels, Belgium. Click on the Analyze. Button in the top menu to use the prediction server.

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Mapping aggregation-specific interactions in human disease. FoldX plugin for YASARA. Http:/ limbo.switchlab.org. Limbo is a position specific prediction algorithm for identifying chaperone binding sites in proteins. It is based on a position-specific scoring matrix (PSSM) trained from in vitro peptide binding data and structural modelling. The applications for Limbo include:. Predicting mutational changes affecting chaperone binding. Design of protein-fusions to increase solubility of proteins.

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Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data | Molecular chaperone binding site prediction

Molecular chaperone binding site prediction. Accurate prediction of DnaK-peptide binding via molecular modelling and experimental data. Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau and Joost Schymkowitz. VIB Switch Laboratory, Vrije Universiteit Brussel, Brussels, Belgium. Click on the Analyze. Button in the top menu to use the prediction server.

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