lh3.github.io
BWA-MEM for long error-prone reads
http://lh3.github.io/2014/12/10/bwa-mem-for-long-error-prone-reads
BWA-MEM for long error-prone reads. A recent paper published by Phil Ashton et al. Has triggered some discussions which subsequently moved to my domain: read mapping. Phil then asked me to clarify how the upcoming bwa-mem works with Oxford Nanopore (ONT) reads. Here we go. Is also using long exact seeds. I then realized that it is also possible for the bwa-mem algorithm to work with PacBio data. With more and more interesting PacBio data sets coming out, I decided to give a try. ONT reads pose new challe...
cbrc.jp
Software | CBRC
http://www.cbrc.jp/cbrc-software
細胞システムの解析 Cellular System Analysis. タンパク質の構造 機能予測 Protein Structure/Function Prediction. Life Science DB Integration Web. Http:/ togo.cbrc.jp/. Pairwise alignment of biological. Http:/ www.cbrc.jp/ALN/. RNA secondary structure prediction software. Http:/ www.ncrna.org/centroidfold/. A program to visualize sequence annotation data of the genetic sequence data with graphical layout. Http:/ www.cbrc.jp/GUPPY/. Http:/ last.cbrc.jp/. Multiple sequence alignment program. Http:/ murlet.ncrna.org/. Http:/ griffi...
answermysearches.com
- Answer My Searches
http://www.answermysearches.com/page/2
What is this place? Answers to everything I search for, every day. Mini Searches with Answers. July 27th, 2012 / Author: Greg Pinero (Primary Searcher). These are links associated with recent searches I’ve done. They’re not difficult enough to warrant to their own posts but still super useful. Joinme Free Screen Sharing and Online Meetings. Is this a good free alternative to gotomeeting or copilot? Python snippet for Routing Number Verification Web Service. 8211; Stack Overflow. This explains exactly how...
campagnelab.org
Configure Goby - Campagne Laboratory
http://campagnelab.org/software/goby/configure
Beta version of BWA with Goby support. Uploading a .tsv file with your samples. NYoSh – Not Your ordinary Shell. NYoSh Analysis Workbench 2.0. Running the NYoSh Workbench on Mac. Installation instructions (MetaR 1.3 ). Instructions for Workflow Tutorial. This page describes how to configure Goby. Including goby in your execution PATH. Please note that at this time Goby is compatible with Java6. Compatibility with Java7 will be addressed in a future release. Each mode has its own help, accessible with the...
maoringo.blogspot.com
Maorin Blog: 2月 2011
http://maoringo.blogspot.com/2011_02_01_archive.html
How very little can be done under the spirit of fear. 語のメモ seqintra meeting (TOM/SAM, sudry, pvalue,refseq,ガンマ分布 etc. General translocase of the outer membrane (TOM complex) and the sorting and assembly machinery (SAM complex), which is dedicated to β-barrel proteins. The SAM. Complex consists of three subunits, Sam35, Sam37, and Sam50, that can associate with a fourth subunit, the morphology component Mdm10, to form the SAM. By http:/ www.jbc.org/content/281/32/22819.full. 12304;仮名】 pち. が 196 以上となる 確率.
lh3.github.io
A few comments on GraphMap
http://lh3.github.io/2015/07/30/a-few-comments-on-graphmap
A few comments on GraphMap. Is a new long-read mapper initially tuned for error-prone ONT reads. There are quite a few interesting points methodologically. The following two comments are mostly about techical and practical aspects. Before you read the comments, please bear in mind that I am the developer of BWA-MEM. I could be biased. Comment 1: consensus quality. The most striking point I found in the preprint. And earlier on their website) is that GraphMap significantly outperforms LAST. The general pr...
epigenome.cbrc.jp
Bisulfighter: a pipeline for accurate detection of methylated cytosines and differentially methylated regions — Epigenome Project Portal Site
https://epigenome.cbrc.jp/epigenome/bisulfighter
Genome Browser for Epigenome Project. Galaxy for Epigenome Project. CREST Data Release Policy. CREST IHEC Release 1. Bisulfighter: a pipeline for accurate detection of methylated cytosines and differentially methylated regions. Bisulfighter consists of two parts: (a) mC call part and (b) DMR detection part. Overview of Bisulfighter is presented in Fig.1. The mC call part does genome mapping and mC detection. At the genome mapping phase, it first converts all cytosines of bisulfite-convert...For read mapp...