inparanoid.sbc.su.se

Inparanoid

InParanoid: ortholog groups with inparalogs. 273 organisms: 3718323 sequences. Version 8.0, Updated December 2013 ( release notes. Select two species and view all their orthologs. SEARCH BY SEQUENCE IDs. View orthologs of a specific gene or protein. Query InParanoid by keywords. Find orthologs in InParanoid similar to your protein sequence. Obtain tables, html, orthoXML. Sequences and core data. Statistics of the database and genomes used. InParanoid Version 4.1 is available here.

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Inparanoid | inparanoid.sbc.su.se Reviews

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InParanoid: ortholog groups with inparalogs. 273 organisms: 3718323 sequences. Version 8.0, Updated December 2013 ( release notes. Select two species and view all their orthologs. SEARCH BY SEQUENCE IDs. View orthologs of a specific gene or protein. Query InParanoid by keywords. Find orthologs in InParanoid similar to your protein sequence. Obtain tables, html, orthoXML. Sequences and core data. Statistics of the database and genomes used. InParanoid Version 4.1 is available here.

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6 summary

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Inparanoid | inparanoid.sbc.su.se Reviews

https://inparanoid.sbc.su.se

InParanoid: ortholog groups with inparalogs. 273 organisms: 3718323 sequences. Version 8.0, Updated December 2013 ( release notes. Select two species and view all their orthologs. SEARCH BY SEQUENCE IDs. View orthologs of a specific gene or protein. Query InParanoid by keywords. Find orthologs in InParanoid similar to your protein sequence. Obtain tables, html, orthoXML. Sequences and core data. Statistics of the database and genomes used. InParanoid Version 4.1 is available here.

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inparanoid.sbc.su.se

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Inparanoid - summary

http://inparanoid.sbc.su.se/cgi-bin/summary.cgi

Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392). Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432). Aquifex aeolicus (strain VF5). Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491). Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893). Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056). Aspergillus kawachii (strain NBRC 4308). Auricularia delicata (strain TFB10046). Bacillus subtilis (strain 168). Cryptoco...

2

Inparanoid

http://inparanoid.sbc.su.se/cgi-bin/faq.cgi

How to download InParanoid? How does it work? How does InParanoid detect orthologs? Why should I use it? How can I search for orthologs of my favorite protein? What are "Clusters", "Inparalog scores" and "bootstrapping"? How can I cite InParanoid? 1 How to download InParanoid? The InParanoid program is available here. 2 What is InParanoid? 3 How does it work? How does InParanoid detect orthologs? 4 Why should I use it? 5 How can I search for orthologs of my favorite protein? 7 How can I cite InParanoid?

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Inparanoid - browse the database

http://inparanoid.sbc.su.se/cgi-bin/e.cgi

Agaricus bisporus var. burnettii. Brassica rapa subsp. pekinensis. Cryptococcus neoformans var. neoformans serotype D. Fusobacterium nucleatum subsp. nucleatum. Gaeumannomyces graminis var. tritici. Hordeum vulgare var. distichum. Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai. Marssonina brunnea f. sp. multigermtubi. Oryza sativa subsp. japonica. Pediculus humanus subsp. corporis. Physcomitrella patens subsp. patens. Puccinia graminis f. sp. tritici. Serpula lacrymans var. lacrymans.

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factors.starklab.org

Stark Lab | Factors | dmel:sug

http://factors.starklab.org/factor/sug

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:Taf7

http://lego.starklab.org/factor/Taf7

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:sug

http://lego.starklab.org/factor/sug

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:Bap55

http://lego.starklab.org/factor/Bap55

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:pnt

http://lego.starklab.org/factor/pnt

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:CG8388

http://lego.starklab.org/factor/CG8388

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:scro

http://lego.starklab.org/factor/scro

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:D19B

http://lego.starklab.org/factor/D19B

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

lego.starklab.org

Stark Lab | Factors | dmel:gro

http://lego.starklab.org/factor/gro

Factors @ Stark Lab. Activity (log2) in S2 cells. Functionally similar transcription factors and cofactors. H sapiens orthologs were obtained from InParanoid8. In particular D.melanogaster-H.sapiens.orthoXML. Genomic sequences of the transcription factors were obtained from the dm3/BDGP Release 5 genome assembly. In the case of cofactors, the genomic sequences stand for our results obtained by deep sequencing.

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Inparanoid

InParanoid: ortholog groups with inparalogs. 273 organisms: 3718323 sequences. Version 8.0, Updated December 2013 ( release notes. Select two species and view all their orthologs. SEARCH BY SEQUENCE IDs. View orthologs of a specific gene or protein. Query InParanoid by keywords. Find orthologs in InParanoid similar to your protein sequence. Obtain tables, html, orthoXML. Sequences and core data. Statistics of the database and genomes used. InParanoid Version 4.1 is available here.

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