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NGS and Short Read Assembly of Whole Genomes | GMU ML Bio Lab
https://gmumlbio.wordpress.com/2010/04/06/ngs-and-short-read-assembly-of-whole-genomes
GMU ML Bio Lab. NGS and Short Read Assembly of Whole Genomes. Posted April 6, 2010. 8211; The first approach which proposed the idea of using Eularian Path for assembly problem. Parallel assembly of short reads. Genome Assembly Reborn: recent computational challenges M. Pop. Genome Assembly Algorithms and Issues M. Pop et al. Detection and correction of false segment duplications caused by genome mis-assembly David R. Kelly, S.L. Salzberg. Setup local BLAST (Linux/Mac) ». Leave a Reply Cancel reply.
Metasim Quick Setup | GMU ML Bio Lab
https://gmumlbio.wordpress.com/2010/04/11/metasim-quick-setup
GMU ML Bio Lab. Posted April 11, 2010. Software tool for simulating metagenomic datasets. Download and Install Metasim http:/ www-ab.informatik.uni-tuebingen.de/software/metasim/. For MacOS there is a .dmg. For Linux there is a shell file. Download the Sequence Datasets. Bacterial (ftp:/ ftp.ncbi.nlm.nih.gov/genomes/Bacteria/all.fna.tar.gz). Viral (ftp:/ ftp.ncbi.nih.gov/refseq/release/viral/viral1.genomic.fna.gz ). Launch Metasim and setup. Import Sequences: right click Database icon Import Files….
Setup local BLAST (Linux/Mac) | GMU ML Bio Lab
https://gmumlbio.wordpress.com/2010/04/07/setup-local-blast-linuxmac
GMU ML Bio Lab. Setup local BLAST (Linux/Mac). Posted April 7, 2010. Download and extract blast software from ncbi ftp site. Download the sequences from ncib ftp site. ( I use completed bacterial genomes. Create .ncbirc file in your home directory, with the following contents. 8212;—————. DATA= path to data e.g. /home/jsmith/blast/data/[BLAST]. BLASTDB= path to db e.g. /home/jsmith/blast/db. 8212;—————. From that directory as follows ( this is way to get makeblastdb to accept multiple input files). Once ...
April | 2010 | GMU ML Bio Lab
https://gmumlbio.wordpress.com/2010/04
GMU ML Bio Lab. Archive for April, 2010 Monthly archive page. Posted April 11, 2010. Software tool for simulating metagenomic datasets. Download and Install Metasim http:/ www-ab.informatik.uni-tuebingen.de/software/metasim/. For MacOS there is a .dmg. For Linux there is a shell file. Download the Sequence Datasets. Bacterial (ftp:/ ftp.ncbi.nlm.nih.gov/genomes/Bacteria/all.fna.tar.gz). Viral (ftp:/ ftp.ncbi.nih.gov/refseq/release/viral/viral1.genomic.fna.gz ). Launch Metasim and setup. Move all the extr...
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GMU ML Bio Lab
GMU ML Bio Lab. Posted April 11, 2010. Software tool for simulating metagenomic datasets. Download and Install Metasim http:/ www-ab.informatik.uni-tuebingen.de/software/metasim/. For MacOS there is a .dmg. For Linux there is a shell file. Download the Sequence Datasets. Bacterial (ftp:/ ftp.ncbi.nlm.nih.gov/genomes/Bacteria/all.fna.tar.gz). Viral (ftp:/ ftp.ncbi.nih.gov/refseq/release/viral/viral1.genomic.fna.gz ). Launch Metasim and setup. Import Sequences: right click Database icon Import Files….
gmumma
April 29, 2016. I haven’t written in ages. . so firstly my apologies for that. There are 2 main reasons for my lack of word vomittting. 1) who has the time for this blogging shit? 2) there’s so much to vomit about that I might as well not bother. To name just a few things: the boiler broke again (4th time since christmas), we had 3 cars break down (every time with baby on board), I’ve been commuting 75 miles (each way! Why god do you do this to me, anything but cheese please! April has been much easier l...
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| Muslim Students Association at George Mason University
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Home | George Mason University Model United Nations
George Mason University Model United Nations. Welcome to George Mason University Model United Nation’s online home! A little about us-. Our meetings are every Thursday from 7:30-8:30pm in SUB1 Room 3B. We attend collegiate Model United Nations conference on the East Coast,. We host our own high school conference, the Mid-Atlantic Simulation of the United Nations (MASUN),. We attend collegiate Model Arab League conferences in the Washington, D.C. area,. GMU Model United Nations focuses on preparing for co...
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