prodigal.ornl.gov
Prodigal: Microbial Gene Prediction Algorithm Description
http://prodigal.ornl.gov/algorithm.html
Prokaryotic Dynamic Programming Genefinding Algorithm. An illustration of the Prodigal dynamic programming connections. Prodigal's algorithm for gene prediction follows the basic principle of KISS. Keep It Simple, Stupid). Compared to other methods, Prodigal's naive log-likelihood functions seem deceptively simple. Despite its lack of complexity (no Hidden Markov Model, no Interpolated Markov Model, etc.), Prodigal nonetheless achieves good results. Constructing a training set for protein coding. A stati...
prodigal.ornl.gov
Prodigal Gene Prediction Results and Comparison with Genbank
http://prodigal.ornl.gov/results.php
Prokaryotic Dynamic Programming Genefinding Algorithm. Evaluating the performance of microbial genefinders is a difficult task, due mainly to the lack of experimentally verified genes in Genbank. A reasonable place to start is the Ecogene. Performance on the Ecogene Verified Gene Set (884 genes, March, 2011). Matching Starts (5' 3'). Is the number of correct genes divided by the number of genes in the Genbank file. "SP", or Specificity. In performing these comparisons, and looking at how other genefindin...
dna1.genome.ou.edu
Local Tools, Collaborators, Other Web Sites of Interest
http://dna1.genome.ou.edu/index_pg2.html
Local Tools, Collaborators, Other Web Sites of Interest. Local tools and information. University of Oklahoma ACGT. Human Repeat Sequence Blast Server. Current Time in Norman, Oklahoma, USA. Current Weather Radar for Norman, Oklahoma, USA. National Weather Service (NOAA), Norman, Oklahoma. Current Weather Forcast for Norman, Oklahoma,USA. Satellite Radar for Florida, the Gulf of Mexico and the Caribbean Sea. National Weather Service Hurricane Center - Satellite Imagery. Grantsburg, WI Weather Radar. Inclu...
abrii.ac.ir
Abrii Portal > Home
http://www.abrii.ac.ir/en
Monday 22 August 2016. Deputy for Administration and Finance. Tissue Culture and Gene Transformation. Microbial Biotechnology and Biosafety. Northern Region Of Iran-Rasht. West and Northwest Region Of Iran-Tabriz. Northeast and East Region Of Iran-Mashhad. Central Region Of Iran-Esfahan. Research Process Management System. Crop Biotech Update Subscription Form. Iranian Biotechnology Web Sites. National Center for Biotechnology Information (NCBI). European Molecular Biology Laboratory (EMBL).
helix.biology.mcmaster.ca
Brian's List of Some WWW Servers
http://helix.biology.mcmaster.ca/www_servers.html
World Wide Web Servers. If you find some noteable sites/places on the net, mail me a message and I will add them to this page. McMaster (external home page). McMaster (local home page). McMaster Micro Home page. How to build one. ArrayExpress at EBI UK. Microarray at EBI UK. Mouse gene expression at MRC Edinburgh. MAD: a suite of tools for microarray data management and processing. A listing of DNA microarray links. Oasis - Microarray Markup Language (MAML). The ExPASy Molecular Biology Server. Click on ...
molbio.uzh.ch
Biolinks.html
http://www.molbio.uzh.ch/biolinks/Biolinks.html
BioInformatics links and sites. European Life Sciences Forum ). Amos' WWW links page. National Center for Genome Resources. Abbrev.: L. Hough's list. NAR 29, 1: Molecular Biology Database Collection. The following links return multiple analysis results:. EBI Hinxton - docs. Network Protein Sequence Analysis @PBIL, see also PROSCAN. Protein analysis launcher at SBNet. Pole Bio-Informatique Lyonnais, PBIL. Oligos, Primers, REs,. Find a sequence using keywords. Human Gene Mutation database. List of P lines.
helix.mcmaster.ca
Brian's List of Some WWW Servers
http://helix.mcmaster.ca/www_servers.html
World Wide Web Servers. If you find some noteable sites/places on the net, mail me a message and I will add them to this page. McMaster (external home page). McMaster (local home page). McMaster Micro Home page. How to build one. ArrayExpress at EBI UK. Microarray at EBI UK. Mouse gene expression at MRC Edinburgh. MAD: a suite of tools for microarray data management and processing. A listing of DNA microarray links. Oasis - Microarray Markup Language (MAML). The ExPASy Molecular Biology Server. Click on ...
prodigal.ornl.gov
Prodigal Downloads: Gene Predictions for All of Microbial Genbank
http://prodigal.ornl.gov/downloads.php
Prokaryotic Dynamic Programming Genefinding Algorithm. The latest versions of Prodigal (from 2.6 onward) are available at the Prodigal github page. Old versions of Prodigal:. Prodigal.v2 50.tar.gz. Prodigal.v2 00.tar.gz. Prodigal.v1 20.tar.gz. In addition, Prodigal has been run on all the completed microbial genomes in Genbank. These results are available below. Prodigal Analysis of Completed Microbial Genomes (March, 2011). Acetobacter pasteurianus IFO 3283-01. Acetobacter pasteurianus IFO 3283-01-42C.
prodigal.ornl.gov
Prodigal Bacterial Gene Prediction Server
http://prodigal.ornl.gov/server.html
Prokaryotic Dynamic Programming Genefinding Algorithm. Prodigal v1.20 Analysis Server. Upload your FASTA sequence(s) from file:. Or copy and paste your FASTA sequence(s):. Treat N's as masked RNA genes:. No (Allow gene models to cross gaps). Yes (do not model across large gap of N's). Allow Genes to Run Off Edges:. Gene Coordinates with Protein Translations. Gene Coordinates with Detailed Start Info. Gene Coordinates, Protein Translations, and Detailed Start Info.