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Computational Biology and Bioinformatics Website - Computational Biology GroupComputational Biology and Bioinformatics Website
http://compbio.charite.de/
Computational Biology and Bioinformatics Website
http://compbio.charite.de/
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Computational Biology and Bioinformatics Website - Computational Biology Group | compbio.charite.de Reviews
https://compbio.charite.de
Computational Biology and Bioinformatics Website
compbio.charite.de
Exome Walker
http://compbio.charite.de/ExomeWalker
VCF Upload: How To. PED Files: How To. Exome Filtering: How To. Phenotypic Series: How To. Prioritization of whole-exome data by random-walk analysis of protein-protein interactions. Is a computational method to prioritise a set of candidates in exome sequencing projects that aim to identify novel Mendelian disease genes. Our approach involves filtering a Variant Call Format. To determine similarity within the PPI network on the basis of the global characteristics of the network. 1 Upload VCF Data. Exomi...
PhenIX - Phenotypic Interpretation of eXomes
http://compbio.charite.de/PhenIX
How does PhenIX work? PhenIX, Phenotypic Interpretation of eXomes. Is a pipeline for ranking (prioritizing) candidate genes in exomes or NGS panels with comprehensive coverage of human Mendelian disease genes. It ranks genes based on predicted variant pathogenicity as well as phenotypic similarity of diseases associated with the genes harboring these variants to the phenotypic profile of the individual being investigated, based on analysis powered by the Human Phenotype Ontology (HPO). The input VCF file...
The Phenomizer - Clinical Diagnostics with Similarity Searches in Ontologies
http://compbio.charite.de/phenomizer
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Teaching Materials |
http://www.langmead-lab.org/teaching-materials
LANGMEAD LAB @ JHU. LANGMEAD LAB @ JHU. You are free to use these materials. If you do, please sign the guestbook at the bottom of this page and say briefly how you’re using them. Algorithms for DNA Sequencing. 55 lectures, about 7 minutes each). Suffix tries and suffix trees. Lecture notes and IPython/Jupyter notebooks. What are Genomics and Computational Genomics? Strings and exact matching. Notebook: Strings in Python. Notebook: Naive exact matching. Notebook: Naive approximate matching. Genes and gen...
.:: Bio-LarK - Biomedical Large Knowledge Collider ::.
http://www.bio-lark.org/index.html
Phenotype silver standard corpora. HPO gold standard and test suite corpora. Australian Research Council (ARC) - Linkage grant SKELETOME (LP100100156). Australian Research Council (ARC) - Discovery Early Career Researcher Award (DECRA) (DE120100508). Australian National Health and Medical Research Council APP1055319 under the NHMRC European Union Collaborative Research Grants scheme. The project received continuous support from the International Rare Disease Research Consortium. SKELETOME Knowledge base:...
human-phenotype-ontology.github.io
About | Human Phenotype Ontology
https://human-phenotype-ontology.github.io/about.html
An ontology is a computational representation of a domain of knowledge based upon a controlled, standardized vocabulary for describing entities and the semantic relationships between them. All of our data is available for download or can be browsed online, but please read the license. And please read this publication. The HPO is now being developed at the Charité Berlin. And with the Monarch Initiative. The HPO can be used for clinical diagnostics in human genetics ( Phenomizer.
Exomiser | Sanger Institute
http://www.sanger.ac.uk/resources/databases/exomiser
Skip to main content. The Exomiser is a Java program that finds potential disease-causing variants from whole-exome or whole-genome sequencing data. Starting from a VCF file and a set of phenotypes encoded using the Human Phenotype Ontology. The functional annotation of variants is handled by Jannovar. KnownGene transcript definitions and hg19 genomic coordinates. Resource. Variant frequency data is taken from the 1000 Genomes,. Tool powered by the OWLTools. Of the Charité - Universitätsmedizin Berlin.
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Brenner Laboratory: Computational Genomics Research Group
Computational Genomics Research Group. University of California, Berkeley. PI: Steven E. Brenner. Paper published: Tavtigian SV, Greenblatt MS, Harrison SM, Nussbaum RL, Prabhu SA, Boucher KM, Biesecker LG, on behalf of the ClinGen Sequence Variant Interpretation Task Team (ClinGen SVI). Modeling the ACMG/AMP Variant Classification Guidelines as a Bayesian Classification Framework. Doi:10.1038/gim.2017.210. 39(3):454-458. PMID:29282786. PMCID:5805595 doi:10.1002/humu.23393. Was published, including the f...
Ma Lab :: University of Illinois at Urbana-Champaign
Computational Comparative Genomics Lab. UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN. Welcome to the Computational Comparative Genomics Lab led by Jian Ma. In the Department of Bioengineering. And the Carl R. Woese Institute for Genomic Biology. At the University of Illinois at Urbana-Champaign. Yang Li received "Chinese Government Award for Outstanding Self-financed Students Abroad". Jian was selected as a CAS Fellow. We received an R01 grant from NIH. Brittany has been selected as an M-CNTC. We received ...
Molecular Dynamics Group - The University of Queensland, Australia
The University of Queensland. Welcome to the Molecular Dynamics Group. We are located in the Molecular Biosciences Building (#76) at the University of Queensland, St Lucia campus, Brisbane. The head of the Molecular Dynamics (MD) group is Professor Alan E. Mark. UQ MD Group Wiki. This page was last updated on July the 10. Enquiries about this Website. The University of Queensland. 61 7 3365 1111. 2017 The University of Queensland. Privacy and Terms of use. Authorised by: Director of OMC.
NIHR Biomedical Research Centre for Mental Health: Computational Biology
NIHR Biomedical Research Centre for Mental Health: Computational Biology. 1230-17.00, 21st Feb 2012: Joint BRC Biomedical Research Centre and King's Centre for Bioinformatics. 13:30-15:00, 2nd December 2010: An introduction to Linux using the command line. 14:00-17:30, 23rd November 2010: Joint NIHR BRC and Kings Centre for Bioinformatics. 12:00-13:30, 4th November 2010: Using Sun Grid Engine on the BRC-MH Linux Cluster. 10:00-12:00, 23rd June 2010: CLC Bio and Software4Labs: Seminar and Demonstration.
Computational Biology in Zurich
Computational Biology in Zurich. Computational biology aims to answer fundamental biological questions with computational approaches, and it develops methods to analyze, manage, and integrate massive amounts of heterogeneous data. 2016-11-30: BIO612: Wayne Hayes (UC Irvine) - Network/graph theory for biology. Otto X. Cordero. Joachim M. Buhmann. Kentaro K. Shimizu. Regarding a collaborative project or a special license. For requests pls. contact Michael Baudis.
Computational Biology and Bioinformatics Website - Computational Biology Group
Linux Tips and Tricks. 62; Computational Biology and Bioinformatics Website. The CBB group at the Institute for Medical Genetics and Human Genetics. We are a multidisciplinary team. Of computer scientists, bioinformaticians, biologists, and MDs. Article on NGS profiling of T cell receptor repertoires published in Bioinformatics. Article on a gold-standard corpus of HPO-annotations in abstracts published in Database. I t is open access.
Molecular Dynamics Group - The University of Queensland, Australia
The University of Queensland. Welcome to the Molecular Dynamics Group. We are located in the Molecular Biosciences Building (#76) at the University of Queensland, St Lucia campus, Brisbane. The head of the Molecular Dynamics (MD) group is Professor Alan E. Mark. UQ MD Group Wiki. This page was last updated on July the 10. Enquiries about this Website. The University of Queensland. 61 7 3365 1111. 2017 The University of Queensland. Privacy and Terms of use. Authorised by: Director of OMC.
Computational Biophysics & Bioinformatics
Computational Biophysics and Bioinformatics. Professor Emil Alexov Group. Delphi Force Web Server. The lab is part of a team that was awarded by NIH $2.3M to study protein-protein interactions. Mr Yunhui Peng was awarded The College of Science and PandA Department award of Outstanding GRA. Mr Yunhui Peng is taking internship in Inserm, Paris, France in the lab of Dr. Maria Miteva. Congratulations for Yunhui Peng who won prestigious Chateaubriand Fellowship. 27,883 Total views.
Joint CMU-Pitt Ph.D. Program in Computational Biology
Responsible Conduct of Research. Bioimage Informatics Specialization Area. Cellular and Systems Modeling Specialization Area. Computational Genomics Specialization Area. Computational Structural Biology Specialization Area. Admissions and Application Info. MD PhD./Medical Scientist Training Program. Aims at establishing biomolecular sequence-structure-function relations using fundamental principles of physical sciences in theoretical models and simulations of structure and dynamics. Provides interdiscipl...
Home - Comparative Biosciences, Inc.
Dermal Efficacy & Models. Delayed Type Hypersensitivity (DTH) Studies. Ocular Pharmacology and Efficacy Models. Neovascular and Vascular Models. Cardiovascular Efficacy and Models. Diabetic and Metabolic Models. Otic and Auditory Studies. Toxicology in Preclinical Studies. Research and Regulatory Pathology Studies. Histopathology and Special Stains. Histomorphometry and Digital Slide Analysis. Devices, Plastics and Ground Section Histology. State-Of-The-Art Facilities and Exceptional Medical Staff. Compa...
Raphael Lab // Princeton University
We are a research group in the Computer Science Department. Our research is focused on Bioinformatics and Computational Biology. Current research interests include next-generation DNA sequencing, structural variation, genome rearrangements in cancer and evolution, and network analysis of somatic mutations in cancer. Earlier research included topics in comparative genomics, multiple sequence alignment, and motif finding. Learn more ». Princeton, NJ 08540. Email: braphael AT cs DOT princeton DOT edu.
