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Protein-RNA Interface Database (PRIDB)

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Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. Detailed analyses of individual protein-RNA complexes and interfaces of interest. Rapid identification of interfacial residues in protein-RNA complexes. Extraction of atomic level information regarding interfacial contacts. Total Number in PRIDB. 76 new protein-RNA complexes...

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Protein-RNA Interface Database (PRIDB)

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Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. We would like to acknowledge support of the following funding agencies:. National Institutes of Health under Grant No. GM066387. United States Department of Agriculture Multidisciplinary Graduate Education Training Grant. ISU Center for Integrated Animal Genomics (CIAG).

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Protein-RNA Interface Database (PRIDB)

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Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. For structures already in the PDB, please return to the Basic Search. Page and enter a PDB ID. To submit structural models or modified PDB files, please use upload per instructions below. Upload a file in PDB format:. Optional) List the protein chains in the file:.

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Protein-RNA Interface Database (PRIDB)

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Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. List of PDB IDs. RB106* (previously known as RB109). Non-redundant set of 109 RNA-binding protein chains from the PDB extracted June 2004. Click here. Terribilini et al. RNA 2006. RB144* (previously known as RB147). Terribilini et al. NAR 2007. Walia et al, 2012.

pridb.gdcb.iastate.edu

Protein-RNA Interface Database (PRIDB)

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Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. Software for predicting RNA Binding Residues in proteins. Http:/ pridb.gdcb.iastate.edu/rnabindr.html/. Software for predicting RNA-protein interactions. Http:/ pridb.gdcb.iastate.edu/RPISeq/. Software for predicting DNA and RNA binding residues in proteins. PROTein-protein ...

pridb.gdcb.iastate.edu

Protein-RNA Interface Database (PRIDB)

http://pridb.gdcb.iastate.edu/index.php

Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. PRIDB IS CURRENTLY UNDER MAINTENANCE. OUTPUT REGARDING INTERFACIAL RESIDUES SHOULD NOT BE CONSIDERED RELIABLE. The Protein-RNA Interface Database (PRIDB) is a comprehensive collection of all protein-RNA complexes from the Protein Data Bank (PDB). PDB ID (e.g. 1ASY.

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Protein-RNA Interface Database (PRIDB)

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Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. PRIDB, Version 2.0, Last updated 2013-09-23. Dobbs Lab, (515) 294-4991, pridb@iastate.edu.

pridb.gdcb.iastate.edu

Protein-RNA Interface Database (PRIDB)

http://pridb.gdcb.iastate.edu/help.php

Search Iowa State University. Protein-RNA Interface Database (PRIDB) v2.0. Bioinformatics and Computational Biology. Center for Computational Intelligence, Learning and Discovery. Department of Genetics, Development and Cell Biology. This page explains how to use the Protein-RNA Interface Database (PRIDB). Below is a table of contents for the tutorial:. 2 Example: Search by PDB ID or protein name. 3 Example: Advanced Search. 4 Example: Submitting a custom .pdb file. PRIDB is designed to allow detailed an...