x3dna.org
3DNA Homepage -- Nucleic Acid Structures
http://x3dna.org/about
3DNA: a suite of software programs for the analysis, rebuilding and visualization of 3-Dimensional Nucleic Acid structures. Middot; 3DNA C source code is available. Middot; DSSR is used in the URS DataBase. Middot; DSSR in the validation of NMR RNA structures. Middot; The DSSR - block-color option. Middot; Cartoon-block representation of quadruplex-duplex interface. Thanks for visiting the 3DNA website. With the support from a dedicated NIH. Grant, I’ve been able to set up a domain name for 3DNA (. V159-...
eternawiki.org
Online Databases - EteRNA WiKi
http://eternawiki.org/wiki/index.php5/Online_Databases
See List of Secondary Structure Databases. RCSB PDB (Protein Data Bank @ Research Collaboratory for Structural Bioinformatics). NDB (Nucleic acid DataBase). RNA CoSSMos (RNA Characterization of Secondary Structure Motifs). Allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric internal loops, hairpin loops, and bulge loops. SCOR (Structural Classification of RNA). Dead, probably definitely).