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bioNMF - An online web-based tool for Non-negative Matrix Factorization in biology.

If you use bioNMF 2.0. Please cite the following work:. E Mejía-Roa, P. Carmona-Saez, R. Nogales, C. Vicente, M. Vázquez, X. Y. Yang, C. García, F. Tirado and A. Pascual-Montano. bioNMF. A web-based tool for nonnegative matrix factorization in biology. Suppl 2, Web Server. Issue): W523-W528. doi:10.1093/nar/gkn335 [ http:/ bionmf.cnb.csic.es. Http:/ nar.oxfordjournals.org/cgi/content/full/36/suppl 2/W523. NMF-mGPU: Non-negative Matrix Factorization on multi-GPU Systems. Scale columns, then normalize rows.

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bioNMF - An online web-based tool for Non-negative Matrix Factorization in biology. | bionmf.cnb.csic.es Reviews

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If you use bioNMF 2.0. Please cite the following work:. E Mejía-Roa, P. Carmona-Saez, R. Nogales, C. Vicente, M. Vázquez, X. Y. Yang, C. García, F. Tirado and A. Pascual-Montano. bioNMF. A web-based tool for nonnegative matrix factorization in biology. Suppl 2, Web Server. Issue): W523-W528. doi:10.1093/nar/gkn335 [ http:/ bionmf.cnb.csic.es. Http:/ nar.oxfordjournals.org/cgi/content/full/36/suppl 2/W523. NMF-mGPU: Non-negative Matrix Factorization on multi-GPU Systems. Scale columns, then normalize rows.

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1 bioNMF

2 Non-negative Matrix Factorization

3 NMF

4 Message Passing Interface

5 MPI

6 Biclustering

7 Sample Classification

8 Gene-expression Analysis

9 Bioinformatics

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bioNMF - An online web-based tool for Non-negative Matrix Factorization in biology. | bionmf.cnb.csic.es Reviews

https://bionmf.cnb.csic.es

If you use bioNMF 2.0. Please cite the following work:. E Mejía-Roa, P. Carmona-Saez, R. Nogales, C. Vicente, M. Vázquez, X. Y. Yang, C. García, F. Tirado and A. Pascual-Montano. bioNMF. A web-based tool for nonnegative matrix factorization in biology. Suppl 2, Web Server. Issue): W523-W528. doi:10.1093/nar/gkn335 [ http:/ bionmf.cnb.csic.es. Http:/ nar.oxfordjournals.org/cgi/content/full/36/suppl 2/W523. NMF-mGPU: Non-negative Matrix Factorization on multi-GPU Systems. Scale columns, then normalize rows.

INTERNAL PAGES

bionmf.cnb.csic.es

1

bioNMF - Example of Sample Classification

http://bionmf.cnb.csic.es/JOBS/SC_example/results.html

BioNMF 2.0 - Main Menu. Data matrix has numeric column-headers:. Data matrix has numeric row-labels:. Method to make data positive:. Do not do anything. Initial values of output matrices W. Range of factorization ranks:. Number of runs per rank:. Number of iterations per run:. Save only the best factorization. Best run (0-based indexing):. Between input matrix and W. Heatmap of input matrix. Profile plot of input matrix. Heatmap of matrix W. Heatmap of matrix H. Profile plot of matrix W. Please submit su...

2

bioNMF - Example of Standard NMF

http://bionmf.cnb.csic.es/JOBS/NMF_example/results.html

BioNMF 2.0 - Main Menu. Data matrix has numeric column-headers:. Data matrix has numeric row-labels:. Method to make data positive:. Initial values of output matrices W. Range of factorization ranks:. Number of runs per rank:. Number of iterations per run:. Best run (0-based indexing):. Between input matrix and W. Heatmap of input matrix. Profile plot of input matrix. Heatmap of matrix W. Heatmap of matrix H. Profile plot of matrix W. Profile plot of matrix H. Output log (detailed information and timings).

3

bioNMF - Example of Biclustering Analysis

http://bionmf.cnb.csic.es/JOBS/Biclustering_example/results.html

BioNMF 2.0 - Main Menu. Data matrix has numeric column-headers:. Data matrix has numeric row-labels:. Method to make data positive:. Initial values of output matrices W. Range of factorization ranks:. Number of runs per rank:. Number of iterations per run:. Combine matrices in a single file. Best run (0-based indexing):. Between input matrix and W. Heatmap of input matrix. Profile plot of input matrix. Heatmap of matrix W. Heatmap of matrix H. Profile plot of matrix W. Profile plot of matrix H. E Mej&iac...

4

bioNMF - Help

http://bionmf.cnb.csic.es/application.html

Is a web-based tool designed to provide a set of analysis methods using the. Model, widely used in the last few years by the biomedical community due to its intuitive nature, since it has the ability to extract highly-interpretable additive parts from datasets, reducing therefore its dimensionality. This online tool provides a user-friendly interface, combined with a computational efficient parallel implementation of the NMF algorithm to explore data in different analysis scenarios:. Will be N × K. E Mej...

5

bioNMF - Web Services - User Guide

http://bionmf.cnb.csic.es/webservices.html

WEB SERVICES USER GUIDE. Format, so these outputs are still accessible via the Web Service. If you use this software, please cite the following work:. E Mejía-Roa, P. Carmona-Saez, R. Nogales, C. Vicente, M. Vázquez, X. Y. Yang, C. García, F. Tirado and A. Pascual-Montano. bioNMF. A web-based tool for nonnegative matrix factorization in biology. Suppl 2, Web Server. Issue): W523-W528. doi:10.1093/nar/gkn335 [ http:/ bionmf.cnb.csic.es. Http:/ nar.oxfordjournals.org/cgi/content/full/36/suppl 2/W523. It mi...

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bioNMF - An online web-based tool for Non-negative Matrix Factorization in biology.

If you use bioNMF 2.0. Please cite the following work:. E Mejía-Roa, P. Carmona-Saez, R. Nogales, C. Vicente, M. Vázquez, X. Y. Yang, C. García, F. Tirado and A. Pascual-Montano. bioNMF. A web-based tool for nonnegative matrix factorization in biology. Suppl 2, Web Server. Issue): W523-W528. doi:10.1093/nar/gkn335 [ http:/ bionmf.cnb.csic.es. Http:/ nar.oxfordjournals.org/cgi/content/full/36/suppl 2/W523. NMF-mGPU: Non-negative Matrix Factorization on multi-GPU Systems. Scale columns, then normalize rows.

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bioNMF - An online web-based tool for Non-negative Matrix Factorization in biology.

If you use bioNMF 2.0. Please cite the following work:. E Mejía-Roa, P. Carmona-Saez, R. Nogales, C. Vicente, M. Vázquez, X. Y. Yang, C. García, F. Tirado and A. Pascual-Montano. bioNMF. A web-based tool for nonnegative matrix factorization in biology. Suppl 2, Web Server. Issue): W523-W528. doi:10.1093/nar/gkn335 [ http:/ bionmf.dacya.ucm.es. Http:/ nar.oxfordjournals.org/cgi/content/full/36/suppl 2/W523. NMF-mGPU: Non-negative Matrix Factorization on multi-GPU Systems. Scale columns, then normalize rows.

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