biocomp.cnb.csic.es

Biocomputing Unit

Developping new algorithms and software to extract the maximum biological knowledge in 3D-EM and X-ray microscopy. Started in 1989 and headed by Dr. Jose Maria Carazo, the Biocomputing Unit (BCU) of the National Center for Biotechnology. Instruct Image Processing Center (I2PC). Works in the area of Three-dimensional electron and X-ray microscopy. We develop the well known XMIPP. Structural Biology by 3D-EM Microscopy and Soft X-rays Cellular Tomography. Information Integration in Structural Biology.

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Biocomputing Unit | biocomp.cnb.csic.es Reviews

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Developping new algorithms and software to extract the maximum biological knowledge in 3D-EM and X-ray microscopy. Started in 1989 and headed by Dr. Jose Maria Carazo, the Biocomputing Unit (BCU) of the National Center for Biotechnology. Instruct Image Processing Center (I2PC). Works in the area of Three-dimensional electron and X-ray microscopy. We develop the well known XMIPP. Structural Biology by 3D-EM Microscopy and Soft X-rays Cellular Tomography. Information Integration in Structural Biology.

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Biocomputing Unit | biocomp.cnb.csic.es Reviews

https://biocomp.cnb.csic.es

Developping new algorithms and software to extract the maximum biological knowledge in 3D-EM and X-ray microscopy. Started in 1989 and headed by Dr. Jose Maria Carazo, the Biocomputing Unit (BCU) of the National Center for Biotechnology. Instruct Image Processing Center (I2PC). Works in the area of Three-dimensional electron and X-ray microscopy. We develop the well known XMIPP. Structural Biology by 3D-EM Microscopy and Soft X-rays Cellular Tomography. Information Integration in Structural Biology.

INTERNAL PAGES

biocomp.cnb.csic.es

1

WebHome < BCUWiki < TWiki

http://biocomp.cnb.csic.es/twiki/bin/view/BCUWiki/WebHome

Welcome to the BCUWiki web. This is a public space where you can share your knowledge with the world. Please feel free to contribute some content. If you have any questions, or need an account to write in this web, please contact the webmaster,. Reference of common UNIX commands. Links to interesting sites. Solutions to some of those tricky inconveniences of the computer user. You will love crunchy. Archive and backup your files. Set ALLOWTOPICCHANGE = BioinfoGroup. Skin by Distributed INFORMATION.com.

2

Directions – Biocomputing Unit

http://biocomp.cnb.csic.es/directions

You can find us at the National Center for Biotechnology. In the campus of the Universidad Autónoma de Madrid. You can reach the university campus by train, bus or car:. Station (lines C1, C7 and C10 of “Cercanías”. The suburban train service). It is a 10 minute train ride from Chamartín station, and a 20 minute ride from Atocha station. Typical train frequency is 10 minutes. Following the “Colmenar Viejo” direction, exit “Universidad Autónoma”. National Center for Biotechnology. 34) 91 585 4922.

3

Publications – Biocomputing Unit

http://biocomp.cnb.csic.es/publications

3DIANA: 3D Domain Interaction Analysis. A toolbox for quaternary structure modelling. Segura J, Sanchez-García R, Tabas-Madrid D, Cuenca-Alba J, Sorzano CO, Carazo JM. Biophysical Journal (in press). Structures of Adenovirus Incomplete Particles Clarify Capsid Architecture and Show Maturation Changes of Packaging Protein L1 52/55k. Condezo GN, Marabini R, Ayora S, Carazo JM, Alba R, Chillón M, San Martín C. Journal of Virology. 89(18):9653-64. Sorzano CO, Álvarez-Cabrera AL, Carazo JM, Jonic S. Cost-cons...

4

Software – Biocomputing Unit

http://biocomp.cnb.csic.es/software

XMIPP: A suite of image processing programs for single-particle 3D Electron Microscopy & more. Scipion: An image processing framework for 3D Electron Microscopy. Dimero: Data Integration for Molecular Reconstruction. 3DEM Benchmark: Automatic and standardized benchmarking of image processing applications. Electron Microscopy Exchange: Standardize information exchange in single-particle between different 3D-EM software packages. 3DEM Methods: An extensive repository of 3D Electron Microscopy methods.

5

The Biocomputing Cluster – Biocomputing Unit

http://biocomp.cnb.csic.es/staff

Carazo@cnb.csic.es. Blanca@cnb.csic.es. Jcuenca@cnb.csic.es. Biocomputing Unit at Centro Nacional de Biotecnología. Vabrishami@cnb.csic.es. X6a;busselez@cnb.csic.es. Ldelcano@cnb.csic.es. X70;conesa@cnb.csic.es. Jose Miguel de la Rosa. X6a;mdelarosa@cnb.csic.es. 106;gomez@cnb.csic.es. 109;kazemi@cnb.csic.es. Mmmtnez@cnb.csic.es. X72;melero@cnb.csic.es. X6a;navas@cnb.csic.es. Joton@cnb.csic.es. X72;sanchez@cnb.csic.es. Carlos Oscar Sánchez Sorzano. Polytechnic School at Universidad Autónoma de Madrid.

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metamagical.org

About

https://www.metamagical.org/about.html

I'm a physicist with quite a few interests. My working days are mostly spent as a software developer in the Biocomputing Unit. In the past I was part of the foofind search engine team. Before that, I worked at the exciting LIGO experiment. First as a postdoc in the Center for Gravitation and Cosmology group at UWM. And then in the Relativity and Gravitation Group at UIB. Even before, I used to do mostly neutrino physics. For some time, I worked as system administrator at the bioinformatics group at CIPF.

pepper.cnb.csic.es

PeppeR - The annotation browser for macro-molecular structures.

http://pepper.cnb.csic.es/das/PeppeR/index_old.jsp

The annotation browser for macro-molecular structures. First release candidate for version 2.12. Although we are still making thorough tests we consider that PeppeR is "mature" enough to allow our users to give it a try. [.]. Download current or previous versions. PeppeR is the Java-based, graphical. Client, intended for visualization of hybrid models (. Volume maps plus atomic resolution structures from fitting experiments) together with their annotations. Which houses atomic coordinates, and UniProt.

hilbert.cnb.csic.es

Directions – Biocomputing Unit

http://hilbert.cnb.csic.es/directions

You can find us at the National Center for Biotechnology. In the campus of the Universidad Autónoma de Madrid. You can reach the university campus by train, bus or car:. Station (lines C1, C7 and C10 of “Cercanías”. The suburban train service). It is a 10 minute train ride from Chamartín station, and a 20 minute ride from Atocha station. Typical train frequency is 10 minutes. Following the “Colmenar Viejo” direction, exit “Universidad Autónoma”. National Center for Biotechnology. 34) 91 585 4922.

inab.org

INB Nodes | INB

http://www.inab.org/about/inb-nodes

Instituto Nacional de Bioinformática. News of the Spanish Bioinformatics Network. List of all projects. The INB is organized as a distributed institute that currently consists of 10 nodes, including a total of 30 staff and internationally renowned scientists, plus a central node that directs and coordinates the activities. Spanish National Cancer Research Centre (CNIO). Coordination of web services through the implementation of standards. Coordination of the development of bioinformatics systems towards ...

biolab.uspceu.com

Laboratorio de bioingeniería - Enlaces relacionados

http://biolab.uspceu.com/enlaces.php

Enlaces de interés. Aquí ofrecemos una serie de enlaces sobre temas relacionados con los trabajos que hacemos en el laboratorio. Here you can find some interesting links about different sciences, conferences, institutions and more, all them related with the laboratory jobs. Congreso Anual de la Soc. EspaÃ ola de IngenierÃa BiomÃ dica, CASEIB 2007. Http:/ caseib2007.upct.es/. Congreso Internacional de MatemÃ ticas en IngenierÃa, MAI 2007. Http:/ www.caminos.upm.es/actividades/Co. Http:/ ieeexplore.iee...

kiaa-clusters.voxcharta.org

Posting Instructions « Vox Charta

http://kiaa-clusters.voxcharta.org/help/club-posting-instructions

ArXiv discussions for 369 institutions. INAF - Osservatorio Astronomico di Padova. And Centro Nacional de Biotecnologia. Argelander-Institut fur Astronomie (AIfA). Brandenberger 's Group Meeting. CEA Saclay Cosmology and Galaxy Evolution. CEA Saclay High Energy. Center for Computational Astrophysics. Centro Nacional de Biotecnologia. EA Milne Centre for Astrophysics. ECAP - Universitaet Erlangen-Nuremberg. Florida A&M University Physics. GCON - Cosmology Group of the National Observatory. IAS Orsay - ISM.

harvard.voxcharta.org

From Thread to Transcontinental Computer: Disturbing Lessons in Distributed Supercomputing « Vox Charta

http://harvard.voxcharta.org/2015/07/06/from-thread-to-transcontinental-computer-disturbing-lessons-in-distributed-supercomputing

ArXiv discussions for 369 institutions. Including Centro Nacional de Biotecnologia. Argelander-Institut fur Astronomie (AIfA). Brandenberger 's Group Meeting. CEA Saclay Cosmology and Galaxy Evolution. CEA Saclay High Energy. Center for Computational Astrophysics. Centro Nacional de Biotecnologia. EA Milne Centre for Astrophysics. ECAP - Universitaet Erlangen-Nuremberg. Florida A&M University Physics. GCON - Cosmology Group of the National Observatory. GRBs in several institutions. IAFE, UBA - CONICET.

hilbert.cnb.csic.es

The Biocomputing Cluster – Biocomputing Unit

http://hilbert.cnb.csic.es/staff

X63;arazo@cnb.csic.es. Blanca@cnb.csic.es. Jcuenca@cnb.csic.es. Biocomputing Unit at Centro Nacional de Biotecnología. Vabrishami@cnb.csic.es. Jbusselez@cnb.csic.es. X6c;delcano@cnb.csic.es. X70;conesa@cnb.csic.es. Jose Miguel de la Rosa. Jmdelarosa@cnb.csic.es. X6a;gomez@cnb.csic.es. 109;kazemi@cnb.csic.es. Mmmtnez@cnb.csic.es. Rmelero@cnb.csic.es. X6a;navas@cnb.csic.es. X6a;oton@cnb.csic.es. Rsanchez@cnb.csic.es. Carlos Oscar Sánchez Sorzano. Polytechnic School at Universidad Autónoma de Madrid.

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Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. Join our workshops on "Modeling of protein flexibility and protein-peptide interactions using CABS-flex and CABS-dock standalone applications". Workshops will be held:. Middot;··. Middot;··. Middot;··. Scientific Reports, 6:37532, 2016.

biocomp.cnb.csic.es

Biocomputing Unit

Developping new algorithms and software to extract the maximum biological knowledge in 3D-EM and X-ray microscopy. Started in 1989 and headed by Dr. Jose Maria Carazo, the Biocomputing Unit (BCU) of the National Center for Biotechnology. Instruct Image Processing Center (I2PC). Works in the area of Three-dimensional electron and X-ray microscopy. We develop the well known XMIPP. Structural Biology by 3D-EM Microscopy and Soft X-rays Cellular Tomography. Information Integration in Structural Biology.

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